Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABLB99_RS01620 Genome accession   NZ_CP157447
Coordinates   347591..348406 (+) Length   271 a.a.
NCBI ID   WP_004711686.1    Uniprot ID   A0A836Z055
Organism   Acinetobacter nosocomialis strain XH1727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342591..353406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS01585 (ABLB99_01585) - 343177..343308 (-) 132 WP_102990545.1 hypothetical protein -
  ABLB99_RS01590 (ABLB99_01590) rpoZ 343347..343625 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABLB99_RS01595 (ABLB99_01595) gmk 343698..344327 (-) 630 WP_002051739.1 guanylate kinase -
  ABLB99_RS01600 (ABLB99_01600) ispH 344450..345400 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABLB99_RS01605 (ABLB99_01605) fimU 345569..346042 (+) 474 WP_106465172.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABLB99_RS01610 (ABLB99_01610) pilV 346036..346596 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  ABLB99_RS01615 (ABLB99_01615) pilW 346596..347594 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  ABLB99_RS01620 (ABLB99_01620) pilX 347591..348406 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABLB99_RS01625 (ABLB99_01625) pilY1 348406..352590 (+) 4185 WP_017392606.1 PilC/PilY family type IV pilus protein Machinery gene
  ABLB99_RS01630 (ABLB99_01630) pilY2 352603..353085 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 28881.67 Da        Isoelectric Point: 6.6293

>NTDB_id=1006918 ABLB99_RS01620 WP_004711686.1 347591..348406(+) (pilX) [Acinetobacter nosocomialis strain XH1727]
MTHLRSKYIVQHHQKGATLIVVLIILLIVIAVGVLAIRVAIVSLKVATNSQIGQLNFQSSDTPIQLITQMDPTTLTNISN
VLGAALKENESHPGSEYNFCYKPVSTTVSFAQTRDASLLRAGTANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQIAVSIP
TDAVNDVPGSNLPRGTNASEGTALPKSMLSTQRIRVISTSFLPAYASTSMQTLQADCLSTNSAKISDNFDSSLSNKQTLA
DCLANHNVPFSTQIQEFNYTNKLTETMAPGS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=1006918 ABLB99_RS01620 WP_004711686.1 347591..348406(+) (pilX) [Acinetobacter nosocomialis strain XH1727]
ATGACCCATTTGAGAAGCAAATATATAGTCCAACATCATCAAAAAGGTGCGACGCTTATTGTTGTGCTTATTATTTTGTT
AATTGTTATTGCTGTGGGGGTTTTAGCCATTAGGGTGGCTATTGTTTCTTTGAAAGTTGCAACAAATAGCCAAATTGGCC
AATTAAATTTTCAATCTTCTGATACTCCTATACAGCTCATCACCCAGATGGATCCAACGACGCTTACAAATATTAGTAAT
GTGTTAGGAGCAGCACTTAAAGAAAATGAGAGTCATCCTGGATCGGAATATAATTTTTGCTATAAGCCAGTTTCGACCAC
TGTAAGTTTTGCCCAAACCCGAGATGCGAGTCTACTGCGAGCAGGAACTGCTAACAATGCCGTGGTAGAGGATGGAGGAG
TGGCTGGCTTTTGTGACCTGACCACTGATTATGGAAGTAATCGTCAAGCTGTCGTTACACAAATTGCTGTAAGCATTCCA
ACAGATGCCGTTAATGATGTTCCAGGTTCAAATTTACCACGCGGAACAAATGCGTCTGAAGGTACTGCTTTACCAAAGAG
TATGCTTTCTACACAACGCATTCGAGTGATTTCAACTTCTTTTTTACCTGCTTATGCTTCTACCTCAATGCAAACTTTGC
AAGCAGATTGTTTGAGTACAAATAGTGCCAAGATCAGCGATAACTTTGATAGCTCATTAAGTAATAAACAAACGTTAGCT
GATTGTTTGGCAAATCATAACGTACCTTTTAGTACTCAGATTCAAGAATTTAACTATACCAATAAACTTACTGAAACTAT
GGCGCCAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836Z055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

82.353

100

0.827

Multiple sequence alignment