TAfinder detailed results

Overview

Job ID wrVbGpMxFf
Sequence name NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome
Predicted type II

Toxin (Protein)


Predicted family chpB (T1049) Predicted domain PRK09812
Locus tag orf3998 Length 104 a.a.
Coordinates 4269419..4269733 (-)

Antitoxin (Protein)


Predicted family chpS (AT1049) Predicted domain PRK11347 (ChpS)
Locus tag orf3999 Length 83 a.a.
Coordinates 4269763..4270014 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
orf3994 4264865..4265887 - 1023 ORF3994 Predicted ORF by PRODIGAL Version 1.20 -
orf3995 4265901..4267403 - 1503 ORF3995 Predicted ORF by PRODIGAL Version 1.20 -
orf3996 4267543..4268499 - 957 ORF3996 Predicted ORF by PRODIGAL Version 1.20 -
orf3997 4268809..4269339 + 531 ORF3997 Predicted ORF by PRODIGAL Version 1.20 -
orf3998 4269419..4269733 - 315 ORF3998 Predicted ORF by PRODIGAL Version 1.20 Toxin
orf3999 4269763..4270014 - 252 ORF3999 Predicted ORF by PRODIGAL Version 1.20 Antitoxin
orf4000 4270227..4270568 - 342 ORF4000 Predicted ORF by PRODIGAL Version 1.20 -
orf4001 4270571..4274350 - 3780 ORF4001 Predicted ORF by PRODIGAL Version 1.20 -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

PRK09812 (E-value: 5.9e-55, Score:182.4)

(13-116)

PRK09907 (E-value: 3.5e-15, Score:53.9)

(14-109)

COG2337 (MazF) (E-value: 2.9e-11, Score:41.5)

(15-112)

PF02452 (PemK) (E-value: 7.3e-07, Score:27.6)

(14-104)

Antitoxin

PRK11347 (ChpS) (E-value: 2.9e-59, Score:195.3)

(1-83)

COG2336 (MazE) (E-value: 1.4e-33, Score:113.3)

(2-82)

PRK09798 (MazE) (E-value: 4.8e-09, Score:34.5)

(5-82)

smart00966 (AbrB) (E-value: 1.4e-07, Score:29.6)

(8-76)

TIGR02609 (doc) (E-value: 2.8e-06, Score:25.4)

(4-51)

TIGR01439 (AbrB) (E-value: 0.0026, Score:15.6)

(13-58)

COG2002 (AbrB) (E-value: 0.0059, Score:14.3)

(19-75)

COG4456 (VagC) (E-value: 0.016, Score:13.3)

(21-56)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11090.80 Da        Isoelectric Point: 5.5667

>ORF3998 TA_29 Toxin
VLVGFDPASGHEQQGAGRPALVLSVQAFNQLGMTLVAPITQGGNFARYAGFSVPLHCEEG
DVHGVVLVNQVRMMDLRARLAKRIGLAADEVVEEALLRLQAVVE

Download         Length: 315 bp

>ORF3998 TA_29 Toxin
TTATTCCACCACCGCCTGCAAGCGTAATAACGCCTCTTCCACCACCTCATCCGCAGCCAG
ACCAATACGCTTTGCCAGCCGGGCGCGTAGATCCATCATCCGCACCTGATTCACCAGCAC
CACGCCGTGCACATCGCCTTCTTCGCAATGTAAAGGAACGCTAAATCCGGCATAACGGGC
AAAATTTCCGCCCTGCGTAATGGGGGCCACCAGCGTCATTCCCAGTTGATTAAAGGCTTG
AACGGAGAGCACAAGCGCAGGTCGACCAGCACCTTGCTGTTCATGGCCGCTTGCTGGATC
AAAGCCAACCAGCAC

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9271.58 Da        Isoelectric Point: 4.4201

>ORF3999 TA_29 Antitoxin
MRITIKRWGNSAGMVIPNIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCD
MNAAELSEQDVWGKSTPAGDEIW

Download         Length: 252 bp

>ORF3999 TA_29 Antitoxin
TTACCATATTTCGTCACCCGCAGGGGTGGATTTACCCCAGACATCCTGCTCGCTAAGTTC
CGCGGCGTTCATGTCACACTGTGCCAGCAGTTCATCAAGCGAGTAGCGCCTGGAGATGGG
TGTCAGAATCAGTTGGTTGTTGCTCACCTGCGCTTCCACGCTCTGCCCCGGCTGTAAGTT
AAGTTCTTTCATTACGATATTGGGAATGACCATACCTGCACTGTTCCCCCATCTTTTTAT
GGTAATACGCAT

Similar Proteins

Only experimentally validated proteins are listed.