Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00613 insolico
T6SS type Type i1
Strain Pseudomonas aeruginosa M18
Replicon (RefSeq) chromosome (NC_017548)
Location 3757284..3776259
Function -
Comment -
References
[1] Wei X et al (2013) Global control of GacA on secondary metabolism, primary metabolism, secretion systems, and motility in the rhizobacterium Pseudomonas aeruginosa M18. J Bacteriol. 195(15):3387-400. [PudMed:23708134]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentFHASfa2Stk1Stp1TssATssBTssCTssETssFTssGTssHTssJTssKTssLTssM
Number111111111111111


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Component ID
Component
Locus tag (Gene)
Coordinate
Strand
Size (bp)
NCBI ID
Product
PAM18_RS172803752833..3753153+321WP_003087644.1hypothetical protein
PAM18_RS172853753210..3753767+558WP_003087642.1Smr/MutS family protein
PAM18_RS17290 (folE)3753845..3754390+546WP_003087639.1GTP cyclohydrolase I FolE
PAM18_RS172953754455..3754916-462WP_003087637.1bacteriohemerythrin
PAM18_RS173003755162..3755542+381WP_003114616.1VOC family protein
T6CP012535Stk1PAM18_RS173053755570..3756559-990WP_003097784.1serine/threonine protein kinase
T6CP012536Stp1PAM18_RS173103756556..3757284-729WP_003087627.1serine/threonine-protein phosphatase
T6CP006463TssMPAM18_RS17315 (tssM)3757284..3760811-3528WP_014603068.1type VI secretion system membrane subunit TssM
T6CP006464TssLPAM18_RS17320 (icmH)3760827..3761696-870WP_003087622.1type IVB secretion system protein IcmH/DotU
T6CP006465TssKPAM18_RS17325 (tssK)3761699..3763030-1332WP_003097790.1type VI secretion system baseplate subunit TssK
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flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Regulator ID
Locus tag (Gene)
Regulator type
Regulatory pathway
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Target (Regulation)
REG0253 experimentalPAM18_RS12360 (gacA)proteinTCS-RRPseudomonas aeruginosa M18chromosome (NC_017548)2625815..2626459 (+)489180874hsiA1 operon transcript (↓); hsiA2 operon transcript (↓); hsiA3 operon transcript (↓)
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experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Effector ID
Locus tag (Gene)
Classification
Cognate immunity protein
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
No matching records found

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
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Immunity protein ID
Locus tag (Gene)
Cognate effector
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
No matching records found

experimental Experimental investigation has been performed.
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Accessory protein ID
Locus tag (Gene)
Type            
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Related structure protein
Related effector
No matching records found