Detailed information of component protein
Summary
| Component ID | T6CP012536 |
| Component protein type | Stp1 |
| T6SS ID (Type) | T6SS00613  (Type i1) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (243 a.a.); Nucleotide sequence (729 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS17310 |
| Coordinate (Strand) | 3756556..3757284 (-) |
| NCBI ID | WP_003087627.1 |
| RefSeq | NC_017548 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PP2C_2 | PF13672.8 | 4.5e-15 | 18..202 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 243 a.a.
>T6CP012536 NC_017548:c3757284-3756556 [Pseudomonas aeruginosa M18] [Stp1]
MQRTEPWRSAARTDRGKVRARNEDAFLDCPDRGLWAVADGMGGHQAGDLASRMIVTSLAELPARAGFDERLNAMRQCLHW
LNRRLGEELTLSAERGDRIIGSTVVALVVEGSRAACVWVGDSRCYLWRGQRLYQLSRDHSLLQRLVDERRMDIEQARAYP
SARALTRAVGASEQLVLDVLELEVHPGDVFLLCSDGLYEELSADALGRALSLASPQVAVERLFDGALSGAARDNLTAVVI
RQ*
MQRTEPWRSAARTDRGKVRARNEDAFLDCPDRGLWAVADGMGGHQAGDLASRMIVTSLAELPARAGFDERLNAMRQCLHW
LNRRLGEELTLSAERGDRIIGSTVVALVVEGSRAACVWVGDSRCYLWRGQRLYQLSRDHSLLQRLVDERRMDIEQARAYP
SARALTRAVGASEQLVLDVLELEVHPGDVFLLCSDGLYEELSADALGRALSLASPQVAVERLFDGALSGAARDNLTAVVI
RQ*
Nucleotide sequence: 729 bp
>T6CP012536 NC_017548:c3757284-3756556 [Pseudomonas aeruginosa M18] [Stp1]
ATGCAACGCACCGAACCCTGGCGCAGCGCGGCACGCACGGATCGCGGCAAGGTCCGCGCGCGCAACGAGGATGCCTTCCT
GGACTGCCCGGATCGCGGGCTCTGGGCGGTCGCCGATGGCATGGGCGGGCACCAGGCCGGCGACCTGGCCAGCCGGATGA
TCGTCACCAGCCTGGCGGAACTGCCGGCCCGGGCGGGATTCGACGAGCGCCTGAACGCGATGCGCCAGTGCCTGCACTGG
CTCAACCGGCGCCTGGGCGAGGAACTCACCCTCAGCGCCGAACGCGGCGACAGGATCATCGGCAGTACGGTGGTGGCGCT
GGTCGTGGAGGGTTCGCGGGCGGCCTGCGTGTGGGTCGGCGACAGCCGCTGCTACCTGTGGCGCGGCCAGCGGCTGTACC
AGCTGTCCCGCGACCACTCGCTGTTGCAGCGACTGGTCGACGAACGGCGGATGGATATCGAGCAGGCCCGCGCCTATCCC
TCGGCGCGCGCGCTGACCCGTGCCGTCGGCGCTAGCGAACAACTGGTGCTGGACGTGTTGGAACTGGAGGTGCATCCCGG
TGATGTCTTCCTGCTCTGCAGCGACGGGCTCTACGAAGAGCTGAGCGCCGATGCGCTGGGTCGCGCGTTGAGCCTGGCAT
CGCCGCAGGTGGCGGTGGAGCGGCTGTTCGACGGTGCCCTGAGCGGCGCCGCACGGGACAACCTGACGGCAGTGGTGATC
CGCCAATGA
ATGCAACGCACCGAACCCTGGCGCAGCGCGGCACGCACGGATCGCGGCAAGGTCCGCGCGCGCAACGAGGATGCCTTCCT
GGACTGCCCGGATCGCGGGCTCTGGGCGGTCGCCGATGGCATGGGCGGGCACCAGGCCGGCGACCTGGCCAGCCGGATGA
TCGTCACCAGCCTGGCGGAACTGCCGGCCCGGGCGGGATTCGACGAGCGCCTGAACGCGATGCGCCAGTGCCTGCACTGG
CTCAACCGGCGCCTGGGCGAGGAACTCACCCTCAGCGCCGAACGCGGCGACAGGATCATCGGCAGTACGGTGGTGGCGCT
GGTCGTGGAGGGTTCGCGGGCGGCCTGCGTGTGGGTCGGCGACAGCCGCTGCTACCTGTGGCGCGGCCAGCGGCTGTACC
AGCTGTCCCGCGACCACTCGCTGTTGCAGCGACTGGTCGACGAACGGCGGATGGATATCGAGCAGGCCCGCGCCTATCCC
TCGGCGCGCGCGCTGACCCGTGCCGTCGGCGCTAGCGAACAACTGGTGCTGGACGTGTTGGAACTGGAGGTGCATCCCGG
TGATGTCTTCCTGCTCTGCAGCGACGGGCTCTACGAAGAGCTGAGCGCCGATGCGCTGGGTCGCGCGTTGAGCCTGGCAT
CGCCGCAGGTGGCGGTGGAGCGGCTGTTCGACGGTGCCCTGAGCGGCGCCGCACGGGACAACCTGACGGCAGTGGTGATC
CGCCAATGA