Detailed information of component protein


Summary

Component ID T6CP006468
Component protein type TssG
T6SS ID (Type) T6SS00613 insolico (Type i1)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (336 a.a.); Nucleotide sequence (1008 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS17355
Coordinate (Strand) 3769141..3770148 (-)
NCBI ID WP_003097804.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.2e-88 20..320
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 336 a.a.    

>T6CP006468 NC_017548:c3770148-3769141 [Pseudomonas aeruginosa M18] [TssG]
METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLRQEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRA
RLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGL
GGEEIRKARELNWKRLLPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLG
ERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRHEEIREFRIGAQNACRLGWTSWLG
RERADGVVTLGSKIH*

  Nucleotide sequence: 1008 bp    

>T6CP006468 NC_017548:c3770148-3769141 [Pseudomonas aeruginosa M18] [TssG]
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGC
GGTCCTGCTGGTCATGGATCGCCTGCGCCAGGAACATCCCGGCCTGGGAGACGAGGCGCTCTACGATCAGTTGGAATTCC
AGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGGGCG
CGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCTCTGGGCGA
CAGCGAGGAGGGCAATCCTACGCGGAACTTTCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTGTTGCCGATCTGGC
GCAAGTACCGCTACCGGGTGAGCTTCCAGAGCGGCGCGAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTG
GGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGCCTGCTGCCCTACCTGGGCCTGCTCAGCCTGCGGGC
GCACTCGGCGGCCTTGATCGAGTCGGTGCTGCGCTACTACTTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATCGAAC
GGCGCGTCGCGATCCTCGAAGAGCAGCGCAACCGGCTCGGCCTGTTCAACAGCCAGCTTGGCGAAGACGCGGTGCTGGGC
GAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAGTTCCTGCC
GATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTTCGCTTCACCCTGCGCGACCCGCTCGACTACGACATCCGGCTGG
TCTTGCGCCACGAGGAAATCCGTGAGTTCCGCATCGGCGCGCAGAACGCCTGCCGCCTTGGCTGGACCAGCTGGCTGGGC
CGGGAGCGCGCGGATGGCGTGGTGACGCTGGGCAGCAAGATTCATTAA