Detailed information of component protein
Summary
| Component ID | T6CP006464 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00613  (Type i1) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (290 a.a.); Nucleotide sequence (870 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS17320 |
| Coordinate (Strand) | 3760827..3761696 (-) |
| NCBI ID | WP_003087622.1 |
| RefSeq | NC_017548 |
| Uniprot ID | V6AGU7_PSEAI, A0A1C7C602_PSEAI, A0A1F0I0I4_9PSED, Q9I357_PSEAE, A0A6N0KJM2_9PSED, A0A241XKA9_PSEAI, A0A448BMX7_PSEFL, A6V7C3_PSEA7 |
| KEGG ID | pap:PSPA7_3604, pae:PA1668 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 3e-66 | 62..264 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 290 a.a.
>T6CP006464 NC_017548:c3761696-3760827 [Pseudomonas aeruginosa M18] [TssL]
MIKEREYHEDEKTVLLDHQGQVPAQGPLTDFAEPPRFEQLEERMIYAARLRPGEAFNVSLNPLVAAASELLSEVVRLKHS
TVLENLAALKERLTSAMKLFEFRAVQDGVENSQVMAARYVLCTVVDEAVVTTPWGNESEWSKISLLSSFHNETFGGEKFF
QLLDRLSKNPVKHLPMLELMYLCLALGFEGKYRVMARGVLDLDGISDALYRQIRQLRGDVPRELSPHWQGLSDQRRGLVR
IVPWWMVALFTLVCLVVMYSGFAWVLGEQRDTVLQPYQSLDAAAGQPGS*
MIKEREYHEDEKTVLLDHQGQVPAQGPLTDFAEPPRFEQLEERMIYAARLRPGEAFNVSLNPLVAAASELLSEVVRLKHS
TVLENLAALKERLTSAMKLFEFRAVQDGVENSQVMAARYVLCTVVDEAVVTTPWGNESEWSKISLLSSFHNETFGGEKFF
QLLDRLSKNPVKHLPMLELMYLCLALGFEGKYRVMARGVLDLDGISDALYRQIRQLRGDVPRELSPHWQGLSDQRRGLVR
IVPWWMVALFTLVCLVVMYSGFAWVLGEQRDTVLQPYQSLDAAAGQPGS*
Nucleotide sequence: 870 bp
>T6CP006464 NC_017548:c3761696-3760827 [Pseudomonas aeruginosa M18] [TssL]
ATGATCAAGGAAAGGGAATACCACGAGGACGAGAAGACCGTCCTCCTCGATCACCAGGGACAGGTACCGGCCCAGGGGCC
GCTGACCGATTTCGCCGAACCGCCGCGCTTCGAACAGCTCGAGGAGCGGATGATCTACGCGGCGCGCCTGCGTCCGGGCG
AGGCCTTCAACGTCAGCCTGAACCCGCTGGTGGCGGCGGCTTCCGAACTGCTTTCGGAAGTGGTCCGGCTCAAGCACAGC
ACCGTGCTGGAGAACCTTGCGGCGCTCAAGGAGCGGTTGACCTCCGCCATGAAGCTCTTCGAATTCCGCGCCGTGCAGGA
TGGCGTGGAAAACAGCCAGGTCATGGCGGCGCGCTACGTGCTGTGCACGGTGGTCGACGAGGCGGTGGTGACCACCCCGT
GGGGCAACGAAAGCGAATGGTCGAAGATCAGCCTGCTGAGCAGCTTCCATAACGAGACCTTCGGCGGCGAGAAGTTCTTC
CAGTTGCTCGACCGGCTGTCGAAGAACCCGGTCAAGCACCTGCCGATGCTGGAGCTGATGTACCTCTGCCTGGCCCTCGG
CTTCGAGGGCAAGTACCGGGTGATGGCTCGCGGCGTGCTCGACCTGGACGGTATTTCCGATGCGCTCTACCGGCAGATCC
GCCAGTTGCGCGGCGACGTGCCGCGCGAACTGTCGCCGCACTGGCAGGGGCTCAGCGACCAGCGTCGCGGCCTGGTGCGG
ATCGTGCCCTGGTGGATGGTGGCGCTGTTCACCCTGGTCTGCCTAGTGGTGATGTATTCGGGATTCGCCTGGGTTCTCGG
CGAACAACGCGACACGGTGCTGCAGCCTTACCAGTCGCTCGATGCGGCGGCAGGACAGCCCGGTTCGTAA
ATGATCAAGGAAAGGGAATACCACGAGGACGAGAAGACCGTCCTCCTCGATCACCAGGGACAGGTACCGGCCCAGGGGCC
GCTGACCGATTTCGCCGAACCGCCGCGCTTCGAACAGCTCGAGGAGCGGATGATCTACGCGGCGCGCCTGCGTCCGGGCG
AGGCCTTCAACGTCAGCCTGAACCCGCTGGTGGCGGCGGCTTCCGAACTGCTTTCGGAAGTGGTCCGGCTCAAGCACAGC
ACCGTGCTGGAGAACCTTGCGGCGCTCAAGGAGCGGTTGACCTCCGCCATGAAGCTCTTCGAATTCCGCGCCGTGCAGGA
TGGCGTGGAAAACAGCCAGGTCATGGCGGCGCGCTACGTGCTGTGCACGGTGGTCGACGAGGCGGTGGTGACCACCCCGT
GGGGCAACGAAAGCGAATGGTCGAAGATCAGCCTGCTGAGCAGCTTCCATAACGAGACCTTCGGCGGCGAGAAGTTCTTC
CAGTTGCTCGACCGGCTGTCGAAGAACCCGGTCAAGCACCTGCCGATGCTGGAGCTGATGTACCTCTGCCTGGCCCTCGG
CTTCGAGGGCAAGTACCGGGTGATGGCTCGCGGCGTGCTCGACCTGGACGGTATTTCCGATGCGCTCTACCGGCAGATCC
GCCAGTTGCGCGGCGACGTGCCGCGCGAACTGTCGCCGCACTGGCAGGGGCTCAGCGACCAGCGTCGCGGCCTGGTGCGG
ATCGTGCCCTGGTGGATGGTGGCGCTGTTCACCCTGGTCTGCCTAGTGGTGATGTATTCGGGATTCGCCTGGGTTCTCGG
CGAACAACGCGACACGGTGCTGCAGCCTTACCAGTCGCTCGATGCGGCGGCAGGACAGCCCGGTTCGTAA