Detailed information of component protein


Summary

Component ID T6CP009051
Component protein type TssE
T6SS ID (Type) T6SS00613 insolico (Type i1)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (136 a.a.); Nucleotide sequence (408 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS17365
Coordinate (Strand) 3772237..3772644 (-)
NCBI ID WP_003097809.1
RefSeq NC_017548
Uniprot ID Q9I366_PSEAE, A0A069Q8T4_PSEAI, A0A448BN13_PSEFL
KEGG ID pae:PA1659
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 5.8e-16 26..113
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 136 a.a.    

>T6CP009051 NC_017548:c3772644-3772237 [Pseudomonas aeruginosa M18] [TssE]
MTGYGSLFERLNGDADKRVGWSREVSAMASVAAHLGKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLSQARSAIEGFIE
AYEPRLSDVRVVSLPRDNDQLRLAFSIEGLLEVEGFKRQVSFSACLDGSGQVKVS*

  Nucleotide sequence: 408 bp    

>T6CP009051 NC_017548:c3772644-3772237 [Pseudomonas aeruginosa M18] [TssE]
ATGACCGGATACGGCAGCCTGTTCGAGCGCCTGAACGGCGACGCGGATAAGCGCGTCGGCTGGAGCCGCGAGGTTTCCGC
CATGGCGTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGGGCGGGCAGCGTGCAGACGCTGTCCGACTACGGGT
TGCCCGATCTCAACGACATGCGCCTGAGCCTGCACGACTCCCTGAGCCAGGCCCGCTCGGCCATCGAAGGTTTCATCGAG
GCTTACGAACCGCGCTTGAGCGACGTGCGTGTCGTTTCCCTGCCACGCGACAACGACCAGCTCCGCCTGGCCTTCAGCAT
CGAAGGGTTGCTGGAGGTGGAAGGTTTCAAGCGCCAGGTGAGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGG
TCAGCTAA