Detailed information of component protein


Summary

Component ID T6CP012535
Component protein type Stk1
T6SS ID (Type) T6SS00613 insolico (Type i1)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (330 a.a.); Nucleotide sequence (990 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS17305
Coordinate (Strand) 3755570..3756559 (-)
NCBI ID WP_003097784.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 9e-38 51..278
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 330 a.a.    

>T6CP012535 NC_017548:c3756559-3755570 [Pseudomonas aeruginosa M18] [Stk1]
MNEPLSSLELLPEEEGGANLTYFAFAAPTASAPDLPAVLPGPLPDVLSGRYRLERMLGAGGMGTVYRARDLLHEQFGDPA
PLVALKLLNESVAESPDASALLYSEFALTRRLRHPNVVRLFTFDVDTACQRAYIVMELMPGLPLDRLLCERPEGLPWSEL
SAIARPLLDVLAYVHEQGVLHGDLKPSNVMLGEEGVRLFDFGLGQAQAGILDGLPQLSRGRIDAWTPGYAAPELLEGAPL
SPAADLYALACVLYELADGRHPFRRLPSNQAREQGLERQLRAPGHLPRRCWPALRTALSLDPERRCIGVRELQEALGARR
SWLAGVLAR*

  Nucleotide sequence: 990 bp    

>T6CP012535 NC_017548:c3756559-3755570 [Pseudomonas aeruginosa M18] [Stk1]
ATGAACGAACCGCTGTCGTCGCTGGAGCTGCTGCCGGAGGAGGAGGGCGGCGCGAACCTGACCTATTTCGCCTTCGCCGC
CCCGACCGCCTCGGCGCCGGACCTGCCGGCGGTGTTGCCCGGTCCGCTGCCGGACGTTCTTTCCGGGCGCTACCGTCTGG
AGCGGATGCTCGGCGCCGGCGGCATGGGGACGGTCTACCGTGCCCGGGACCTGCTCCATGAGCAGTTCGGCGACCCGGCG
CCGCTGGTAGCGCTGAAGCTGCTCAACGAGTCGGTCGCCGAGTCACCCGACGCCAGCGCCTTGCTCTATAGCGAGTTCGC
CCTGACCCGGCGCTTGCGCCATCCGAACGTCGTGCGTCTGTTCACCTTCGACGTCGACACCGCATGCCAGCGCGCCTACA
TCGTCATGGAACTCATGCCTGGCCTGCCGCTCGACCGCCTGCTCTGCGAGCGTCCCGAAGGCCTGCCCTGGTCCGAGCTG
AGCGCGATCGCCCGGCCGTTGCTGGATGTTCTGGCCTACGTCCACGAACAAGGAGTACTGCATGGCGACCTGAAGCCGAG
CAACGTGATGCTCGGCGAAGAGGGCGTGCGGCTCTTCGACTTCGGCCTCGGCCAGGCGCAGGCAGGCATCCTGGATGGCC
TGCCGCAGCTCAGCCGGGGCCGCATCGACGCCTGGACTCCGGGCTACGCCGCTCCCGAACTGCTCGAGGGCGCGCCATTG
TCGCCGGCGGCCGACCTGTATGCGCTGGCCTGCGTCCTCTACGAACTGGCCGACGGTCGCCATCCGTTCCGCCGCCTGCC
CTCGAACCAGGCCCGGGAGCAGGGGCTGGAGCGCCAGCTGCGCGCGCCCGGACACCTGCCTCGGCGCTGCTGGCCGGCGC
TGCGTACCGCCCTGAGCCTCGACCCCGAACGGCGCTGCATCGGCGTCCGCGAATTGCAGGAAGCGCTGGGCGCGCGGCGT
TCCTGGCTGGCCGGCGTTCTTGCCCGTTGA