Detailed information of component protein


Summary

Component ID T6CP006463
Component protein type TssM
T6SS ID (Type) T6SS00613 insolico (Type i1)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (1176 a.a.); Nucleotide sequence (3528 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS17315
Coordinate (Strand) 3757284..3760811 (-)
NCBI ID WP_014603068.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.1e-78 198..452
IcmF-related PF06761.14 1.3e-71 507..792
IcmF_C PF06744.14 2e-22 1050..1154
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1176 a.a.    

>T6CP006463 NC_017548:c3760811-3757284 [Pseudomonas aeruginosa M18] [TssM]
MKNFFKKVGAFLRKTWVWTLLLVLLAALLVWFVGPLLAVADYKFWESPTSRLLSISLMFLVWGLAMVFVSWRAGVRRKAV
EDSDEGQERLRRDGLIEDEQKELRSRFKDALRTLKTSSLYRGRSERWRNELPWYMLIGPQGSGKTSLLDFSGLEFPINRI
DRKLTRDTAGTRYCDWYFADHGVLIDTAGRYLTQADGEVDGGAWATLLGLLRKRRRARPLNGVMVSIPVETLLSDDEMAL
DTLARQVRARLQEIQQTLHLDLPVYLVLSKADQLLGFDEFFDQLSREESDQVLGTSFGKEQNGTDVTVLRQAFEDLLRRL
NSQVIMRIHQERDTLRRGRILDFPHQLGQIGERLCLFVELAFTGNRYQSASRLRGFYLTSAPHLAQQLDEDTAGIGANLG
IASGLLPTLRNGRSRFIHHLLSQVIFPEANLAGLDRRERTRIHWGQRALYVGSLALLLLFGLLWAGGFSANHERLERVRE
LAQQWAQQRQALGERDDAMAALKTLDSSYAATTVFPPKGEVSLHERAGLYQGNEVNPPLAAAYRRELETQLLPRVARMLE
AQIRGNMQNRERLLNSLRAYLMLNLRERRENGWLKDWVATDWSQRYAGNGTVQNGLNTHFARLLEQPFSYPLNETLVAQA
RQVLRSESLANVVYRVLREQARSLPEYRFGQHLGPQAGLFVGTDYVIPGFYTQQGYQQYFVVQGASLVNDILRDNWVLGE
GSGISDMDLRRLMVELEQLYFRDYANFWSEAVGRLGLLPFNDAGEGADQVSGLLAANSPILQLLLEVRENTRFPVLAESA
EALAEASDKAAEKGGKLGKAAAAAAGKARDALAKNLPDTAKKSLQRRFEPLHRLLDDNNGPAADLTPLLQALNELQLQLA
GLARASQPEQAAFDMAKSRMGGQRDALSNLRNASARLPRPLGGWFSVLAEDAWRLVLGDAYLYLNQRYQSELYGFYSKAI
NKRYPFNAHSASDVAVSDFREFFKAQGVAERFFETYMRPFVSGDPGSYRLRSVDGYSLPMSKVYLDQMGTAQVIRQSFFA
ENPAEPQVRFRLEPYTLDPGVSRAEFRFDGQSMEYRHGPIVPMSFKWPSDADGGRTSLVLEKMAGRPVGIERNTGPWSLF
RLFDLMQTEYLSGRDVMVLKADLGGLRANYLLLAQRTPNPFDLAVLRSFRMPVQL*

  Nucleotide sequence: 3528 bp    

>T6CP006463 NC_017548:c3760811-3757284 [Pseudomonas aeruginosa M18] [TssM]
ATGAAAAACTTCTTCAAGAAAGTCGGCGCCTTCCTGCGCAAGACGTGGGTCTGGACGCTGTTGCTGGTACTCCTGGCGGC
ATTGCTGGTGTGGTTCGTCGGGCCGCTGCTGGCGGTCGCCGACTACAAGTTCTGGGAAAGCCCGACCTCGCGGTTGCTGA
GCATCAGCCTGATGTTCCTGGTCTGGGGGCTGGCGATGGTCTTCGTCAGTTGGCGCGCCGGAGTGCGGCGCAAGGCCGTC
GAGGACAGCGACGAGGGCCAGGAGCGCCTGCGCCGCGACGGTCTGATCGAAGACGAACAGAAGGAATTGCGCAGCCGCTT
CAAGGACGCCTTGCGCACCCTGAAGACCTCCAGCCTGTACCGCGGCCGCAGCGAGCGCTGGCGCAACGAGCTGCCCTGGT
ACATGCTGATCGGCCCGCAGGGAAGCGGCAAGACCAGCCTGCTGGACTTTTCCGGACTGGAATTCCCGATCAACCGGATC
GACCGCAAGCTGACCCGCGACACCGCCGGCACGCGCTACTGCGACTGGTACTTCGCCGACCACGGCGTCCTGATCGACAC
CGCCGGGCGCTACCTGACCCAAGCCGACGGCGAGGTCGACGGGGGCGCCTGGGCGACCCTGCTCGGCCTGTTGCGCAAGC
GCCGCCGCGCACGGCCGCTGAATGGCGTGATGGTGTCGATTCCGGTGGAAACGTTGCTCAGCGACGACGAGATGGCGCTG
GATACGCTGGCTCGCCAGGTGCGCGCGCGCCTGCAGGAAATCCAGCAGACCCTGCACCTCGATCTGCCGGTCTACCTGGT
GCTGAGCAAGGCCGACCAGTTGCTCGGCTTCGACGAGTTCTTCGACCAGTTGAGCCGCGAGGAGAGCGACCAGGTTCTGG
GCACCAGCTTCGGCAAGGAGCAGAACGGCACCGATGTGACGGTCCTGCGCCAGGCGTTCGAGGACCTTCTGCGACGCCTG
AACAGCCAGGTGATCATGCGCATCCACCAGGAGCGCGATACCCTGCGTCGCGGTCGCATCCTCGACTTCCCGCACCAGCT
TGGCCAGATCGGCGAGCGGTTGTGCCTGTTCGTCGAACTCGCCTTCACCGGCAACCGCTACCAGAGCGCCAGCCGCCTGC
GCGGCTTCTACCTGACCAGCGCGCCGCACCTGGCCCAGCAGCTGGACGAGGACACCGCTGGCATCGGCGCCAACCTGGGG
ATCGCCAGCGGCCTGCTGCCGACCCTGCGCAACGGGCGCTCGCGCTTCATCCATCACCTGCTGAGCCAGGTGATCTTCCC
CGAGGCCAACCTGGCAGGTCTCGATCGCCGCGAACGCACGCGCATCCACTGGGGCCAGCGAGCCCTGTACGTCGGTTCGC
TGGCGCTCCTTCTGCTATTCGGCCTGCTCTGGGCTGGCGGTTTCTCGGCCAACCACGAGCGCCTGGAGCGGGTCCGCGAG
CTGGCGCAGCAATGGGCCCAGCAGCGCCAGGCGCTTGGCGAGCGCGACGACGCCATGGCGGCGCTGAAGACGCTGGATAG
CAGCTATGCGGCGACCACCGTGTTTCCGCCCAAAGGGGAAGTCTCGCTGCACGAGCGCGCCGGGCTGTACCAGGGCAACG
AGGTCAACCCGCCGCTGGCCGCTGCCTATCGCCGCGAGCTGGAGACGCAACTGCTGCCGCGCGTGGCGCGGATGCTCGAA
GCGCAGATCCGCGGCAACATGCAGAATCGCGAACGCCTGCTCAACAGCCTGCGGGCCTACCTGATGCTGAATCTGCGCGA
GCGCCGCGAGAACGGATGGCTCAAGGACTGGGTGGCTACCGACTGGTCGCAGCGCTATGCCGGCAACGGCACCGTGCAGA
ATGGCCTGAACACGCATTTCGCCCGTCTGCTCGAGCAACCGTTCAGCTATCCGCTGAACGAGACCCTGGTGGCCCAGGCA
CGCCAGGTGCTGCGCAGCGAGTCCCTGGCCAACGTGGTCTACCGGGTGCTGCGCGAACAGGCGCGAAGCCTGCCCGAGTA
TCGCTTCGGCCAGCACCTGGGGCCGCAGGCCGGTCTGTTCGTCGGCACCGACTACGTGATCCCGGGGTTCTACACCCAGC
AGGGCTACCAGCAGTACTTCGTGGTCCAGGGCGCCAGCCTGGTCAACGACATCCTTCGCGACAACTGGGTCCTGGGCGAG
GGCAGCGGGATCAGCGACATGGACCTGCGGCGCCTGATGGTCGAACTCGAGCAGTTGTATTTCCGCGACTACGCGAACTT
CTGGAGCGAGGCGGTCGGACGCCTGGGCCTGCTGCCGTTCAACGATGCCGGCGAGGGCGCCGACCAGGTTTCCGGGCTGC
TCGCCGCCAACTCGCCGATCCTCCAGTTGTTGCTGGAGGTCCGTGAGAACACCCGTTTCCCGGTCCTGGCGGAGAGCGCC
GAGGCGCTGGCAGAGGCCAGCGACAAGGCCGCGGAAAAGGGCGGCAAGCTGGGCAAGGCGGCCGCCGCGGCGGCCGGCAA
GGCCAGGGACGCGTTGGCGAAGAACCTGCCGGATACCGCGAAGAAGTCCCTGCAACGCCGCTTCGAGCCCCTGCATCGCC
TGCTCGACGATAACAACGGCCCGGCGGCCGACCTCACCCCGCTGTTGCAGGCGCTCAACGAGTTGCAGTTGCAACTCGCC
GGACTGGCGCGCGCCAGCCAGCCGGAGCAGGCGGCTTTCGACATGGCGAAGAGCCGCATGGGCGGCCAGCGCGATGCCCT
GAGCAACCTGCGCAACGCCTCCGCGCGACTGCCGCGACCGCTCGGCGGATGGTTCAGCGTGCTGGCCGAAGACGCCTGGC
GGCTGGTCCTCGGCGATGCCTACCTGTACCTCAACCAGCGCTACCAGAGCGAGCTGTACGGTTTCTACAGCAAGGCGATC
AACAAGCGCTACCCGTTCAACGCGCACAGCGCCAGCGATGTCGCGGTCAGCGATTTCCGCGAGTTCTTCAAGGCGCAGGG
CGTCGCCGAACGCTTCTTCGAAACCTACATGCGGCCCTTCGTCAGCGGCGACCCGGGCAGTTACCGCCTGCGCAGCGTGG
ACGGTTACAGCCTGCCGATGTCCAAGGTCTATCTCGACCAGATGGGCACGGCCCAGGTGATCCGCCAGAGCTTCTTCGCC
GAGAACCCGGCCGAGCCACAGGTGCGCTTCCGCCTGGAGCCCTATACCCTCGATCCTGGCGTCAGCCGCGCCGAGTTCCG
TTTCGACGGTCAGTCCATGGAGTACCGCCACGGCCCGATCGTGCCGATGTCGTTCAAGTGGCCCAGCGACGCCGACGGCG
GCCGCACCAGCCTGGTGCTGGAGAAGATGGCCGGACGACCGGTGGGAATCGAACGCAATACCGGGCCCTGGTCGCTGTTC
AGGCTGTTCGACCTGATGCAGACCGAGTACCTCAGCGGGCGTGACGTGATGGTGCTCAAGGCCGACCTGGGCGGCCTGCG
CGCCAACTACCTGCTGCTCGCCCAGCGCACGCCGAATCCGTTCGATCTCGCGGTCCTGCGCAGCTTCCGCATGCCGGTGC
AGCTCTGA