Detailed information of component protein


Summary

Component ID T6CP012073
Component protein type FHA
T6SS ID (Type) T6SS00613 insolico (Type i1)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (398 a.a.); Nucleotide sequence (1194 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) PAM18_RS17335
Coordinate (Strand) 3763539..3764732 (-)
NCBI ID WP_003114611.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 1.7e-12 30..96

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 398 a.a.    

>T6CP012073 NC_017548:c3764732-3763539 [Pseudomonas aeruginosa M18] [FHA]
MELVLEMLSAKQFVPTELCSKTFGRNGGLIGRGGECDWAIPDRKRHLSKQHARVSYRNGAFYLTDTSSNGIRAGNGSRLP
HGEPQRIEQDSVFLLGDFEIRARLLREPDELAMDVGRPQPAGSIIPDDAFLALDPLQALDQDGADAYELDDLSAIAQPSH
EAGARADYARIDMESLVVPELVPAPAAPQEPVESPPPERDEAFWQRFGQALGVDLEGLDGAAREALAIDAAGLLRQCIGG
LQQSLRTRSELKNELRLSLSTLRDTGKNPLRFSADAGEALGHLLRDGKPGQLSGEQAVARSFRDLQAHQVALLGASRAAV
RATLEHFSPQQLALRFERDGRRPLLATSGSRWRAYGRYHQSLCQDDDWSERLLARDFAQAYEEQVRLISTLYTEHQG*

  Nucleotide sequence: 1194 bp    

>T6CP012073 NC_017548:c3764732-3763539 [Pseudomonas aeruginosa M18] [FHA]
ATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACAGAGCTATGCAGCAAGACCTTCGGCAGGAACGG
CGGCCTCATCGGCCGCGGCGGTGAGTGCGATTGGGCGATTCCCGATCGCAAGCGGCACCTGTCCAAGCAGCATGCGCGGG
TCAGCTATCGCAACGGCGCGTTCTACCTGACCGACACCAGCAGCAACGGCATCCGCGCCGGCAACGGCAGCCGCCTGCCG
CATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGCTCGGCGACTTCGAGATCCGCGCGCGGTTGCTGCGCGA
GCCCGACGAGCTCGCCATGGACGTCGGGCGGCCGCAGCCGGCGGGCAGCATCATTCCGGACGATGCCTTCCTGGCCCTCG
ATCCGTTGCAGGCGCTCGACCAGGACGGTGCAGATGCCTACGAACTCGACGACCTGAGCGCGATCGCCCAGCCCAGTCAT
GAGGCCGGGGCGCGTGCGGACTACGCGCGGATCGACATGGAAAGCCTGGTCGTACCGGAGCTGGTGCCCGCCCCGGCGGC
TCCGCAGGAACCCGTGGAAAGTCCGCCTCCGGAACGCGACGAAGCCTTCTGGCAGCGTTTCGGCCAGGCGCTCGGAGTGG
ACCTCGAAGGCCTCGACGGCGCTGCGCGCGAAGCGCTGGCGATCGACGCCGCCGGTTTGCTGCGGCAGTGCATCGGCGGC
TTGCAGCAGAGCCTGCGGACCCGCAGCGAACTGAAGAACGAACTGCGCCTGTCGCTGAGCACATTGCGCGATACCGGCAA
GAATCCCTTGCGCTTCAGCGCCGATGCCGGCGAGGCGCTGGGTCATCTGCTACGGGATGGCAAGCCTGGCCAGTTGAGTG
GCGAACAGGCCGTCGCACGCAGTTTCCGCGACCTCCAGGCACACCAGGTGGCGCTGCTCGGCGCCAGCCGGGCGGCGGTG
CGCGCGACCCTCGAGCATTTCTCGCCGCAGCAGCTGGCCCTGCGTTTCGAGCGCGACGGTCGCCGGCCGTTGCTGGCCAC
CTCGGGCAGCCGCTGGCGTGCCTACGGTCGCTACCACCAGTCGCTATGCCAGGACGACGATTGGAGCGAGCGTCTGTTGG
CGCGTGATTTCGCCCAGGCCTACGAAGAGCAGGTTCGCCTGATTTCCACCCTCTACACCGAGCACCAAGGATGA