SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP012073
Component protein type	FHA
T6SS ID (Type)	T6SS00613 (Type i1)
Strain	Pseudomonas aeruginosa M18
Replicon	chromosome
Sequence	Protein sequence (398 a.a.); Nucleotide sequence (1194 bp)
Reference	[1] Wei X, Huang X, Tang L, et al. Global control of GacA in secondary metabolism, primary metabolism, secretion systems, and motility in the rhizobacterium Pseudomonas aeruginosa M18. J Bacteriol. 2013 Aug;195(15):3387-400. doi: 10.1128/JB.00214-13. Epub 2013 May 24. PMID: 23708134

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PAM18_RS17335
Coordinate (Strand)	3763539..3764732 (-)
NCBI ID	WP_003114611.1
RefSeq	NC_017548
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
FHA	PF00498.28	1.7e-12	30..96

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 398 a.a.

						>T6CP012073 NC_017548:c3764732-3763539 [Pseudomonas aeruginosa M18] [FHA]
MELVLEMLSAKQFVPTELCSKTFGRNGGLIGRGGECDWAIPDRKRHLSKQHARVSYRNGAFYLTDTSSNGIRAGNGSRLP
HGEPQRIEQDSVFLLGDFEIRARLLREPDELAMDVGRPQPAGSIIPDDAFLALDPLQALDQDGADAYELDDLSAIAQPSH
EAGARADYARIDMESLVVPELVPAPAAPQEPVESPPPERDEAFWQRFGQALGVDLEGLDGAAREALAIDAAGLLRQCIGG
LQQSLRTRSELKNELRLSLSTLRDTGKNPLRFSADAGEALGHLLRDGKPGQLSGEQAVARSFRDLQAHQVALLGASRAAV
RATLEHFSPQQLALRFERDGRRPLLATSGSRWRAYGRYHQSLCQDDDWSERLLARDFAQAYEEQVRLISTLYTEHQG*					

Nucleotide sequence: 1194 bp

						>T6CP012073 NC_017548:c3764732-3763539 [Pseudomonas aeruginosa M18] [FHA]
ATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACAGAGCTATGCAGCAAGACCTTCGGCAGGAACGG
CGGCCTCATCGGCCGCGGCGGTGAGTGCGATTGGGCGATTCCCGATCGCAAGCGGCACCTGTCCAAGCAGCATGCGCGGG
TCAGCTATCGCAACGGCGCGTTCTACCTGACCGACACCAGCAGCAACGGCATCCGCGCCGGCAACGGCAGCCGCCTGCCG
CATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGCTCGGCGACTTCGAGATCCGCGCGCGGTTGCTGCGCGA
GCCCGACGAGCTCGCCATGGACGTCGGGCGGCCGCAGCCGGCGGGCAGCATCATTCCGGACGATGCCTTCCTGGCCCTCG
ATCCGTTGCAGGCGCTCGACCAGGACGGTGCAGATGCCTACGAACTCGACGACCTGAGCGCGATCGCCCAGCCCAGTCAT
GAGGCCGGGGCGCGTGCGGACTACGCGCGGATCGACATGGAAAGCCTGGTCGTACCGGAGCTGGTGCCCGCCCCGGCGGC
TCCGCAGGAACCCGTGGAAAGTCCGCCTCCGGAACGCGACGAAGCCTTCTGGCAGCGTTTCGGCCAGGCGCTCGGAGTGG
ACCTCGAAGGCCTCGACGGCGCTGCGCGCGAAGCGCTGGCGATCGACGCCGCCGGTTTGCTGCGGCAGTGCATCGGCGGC
TTGCAGCAGAGCCTGCGGACCCGCAGCGAACTGAAGAACGAACTGCGCCTGTCGCTGAGCACATTGCGCGATACCGGCAA
GAATCCCTTGCGCTTCAGCGCCGATGCCGGCGAGGCGCTGGGTCATCTGCTACGGGATGGCAAGCCTGGCCAGTTGAGTG
GCGAACAGGCCGTCGCACGCAGTTTCCGCGACCTCCAGGCACACCAGGTGGCGCTGCTCGGCGCCAGCCGGGCGGCGGTG
CGCGCGACCCTCGAGCATTTCTCGCCGCAGCAGCTGGCCCTGCGTTTCGAGCGCGACGGTCGCCGGCCGTTGCTGGCCAC
CTCGGGCAGCCGCTGGCGTGCCTACGGTCGCTACCACCAGTCGCTATGCCAGGACGACGATTGGAGCGAGCGTCTGTTGG
CGCGTGATTTCGCCCAGGCCTACGAAGAGCAGGTTCGCCTGATTTCCACCCTCTACACCGAGCACCAAGGATGA					