Detailed information of component protein


Summary

Component ID T6CP006469
Component protein type TssF
T6SS ID (Type) T6SS00613 insolico (Type i1)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (596 a.a.); Nucleotide sequence (1788 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS17360
Coordinate (Strand) 3770112..3771899 (-)
NCBI ID WP_014603071.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.2e-141 3..591
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 596 a.a.    

>T6CP006469 NC_017548:c3771899-3770112 [Pseudomonas aeruginosa M18] [TssF]
VSFNHYYQSELTALRQLGRRFAERSPALAPFLGQVGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSMMHLLWPNYMR
PLPAFSILQFDPLTRPGGALRVERDTPVESRPVGEVACRFRTCYATEVLPLVLEALNYSVTGEGALLGLRLAMNCDGHLG
ELGLSRLRLHLAGERYISQMLYLCLLRNLESIQLIPLDPHGRALDGVAGKPMSFRLTGERVQPVGFAEDEALIPYPLNTF
RGYRYLQEYFAFQDKFLFVDVDGLDLLGALPEETLKQVRGLELRFDIRKSGIQRLHPTLENVKLYCTPVANLFRHDALPI
RLDGKQDEYLLMPAEYSLEDCGVFSVEGVTGWRPGGLGYQAYVPFESFEHDPSFDVPEARPHYSVRQRTSLLHDGLDTYL
SFGIRHPEQTETLSVELTCTNQNLPQRLRLGDICVACEGTPEFLGFRNITPPTPSYAPPLNRDFLWKLISNMSLNYLSLA
NVDALKVILETYDLPRYYDQHAAKVSKRLLGGLKAVRHEHVDRLHRGLPLRGLRTELTIDPEGYIGEGDLFVFASVLNEF
FALYASINSYHELRVRSTQGDVYQWKPRMGLQPLL*

  Nucleotide sequence: 1788 bp    

>T6CP006469 NC_017548:c3771899-3770112 [Pseudomonas aeruginosa M18] [TssF]
GTGTCCTTCAATCATTACTACCAGAGCGAACTCACCGCACTGCGCCAGCTGGGGCGCCGTTTCGCCGAGCGTAGCCCGGC
CCTGGCCCCGTTTCTCGGGCAGGTCGGACGCGATCCGGATGTCGAGCGCCTGCTCGAGGGCTTTGCCTTCCTGACCGGGC
GGTTGCGGCAGAAGCTGGACGACGAGTTGCCGGAACTCAGTCACTCGATGATGCACCTGCTGTGGCCGAACTATATGCGC
CCGCTGCCGGCTTTCAGCATTCTCCAGTTCGACCCCCTGACCCGCCCGGGCGGGGCGCTGCGCGTGGAGCGCGATACGCC
GGTCGAGAGCCGGCCGGTGGGCGAGGTCGCCTGTCGCTTCCGTACCTGCTACGCCACCGAGGTCCTGCCGCTGGTGCTGG
AGGCGCTCAACTATTCGGTGACCGGCGAGGGTGCGCTGCTCGGCCTGCGCCTGGCGATGAACTGCGACGGGCATCTCGGC
GAGCTGGGCCTGAGTCGGCTGCGCCTGCACCTGGCCGGCGAGCGCTACATCAGCCAGATGCTCTATCTGTGCCTGCTGCG
CAACCTGGAGAGCATCCAACTGATTCCGCTGGACCCCCATGGGCGGGCGCTGGATGGCGTGGCCGGCAAGCCGATGTCGT
TCCGCCTGACGGGCGAGCGGGTGCAGCCGGTGGGTTTCGCCGAAGACGAGGCGTTGATTCCCTATCCGCTGAATACCTTC
CGTGGCTATCGCTACCTGCAGGAGTACTTCGCGTTCCAGGACAAGTTCCTGTTCGTCGACGTGGATGGCCTTGACCTGCT
CGGCGCGCTGCCCGAGGAAACCCTCAAGCAGGTCCGCGGCCTCGAGTTGCGCTTCGATATCCGCAAGAGCGGCATCCAGC
GCCTGCACCCGACACTGGAGAACGTCAAGCTGTACTGTACGCCGGTGGCCAACCTGTTCCGCCACGATGCGCTGCCGATC
CGCCTCGACGGCAAGCAGGACGAGTACCTGCTGATGCCGGCCGAATACAGCCTGGAGGACTGCGGGGTGTTCTCGGTAGA
GGGCGTCACTGGCTGGCGGCCGGGCGGGCTCGGCTACCAGGCCTATGTGCCGTTCGAGTCCTTCGAGCACGATCCCAGCT
TCGACGTCCCGGAAGCACGGCCCCACTACAGCGTCCGGCAACGGACCTCGTTGCTGCACGATGGCCTGGACACCTACCTG
AGCTTCGGCATCCGCCATCCCGAGCAGACCGAGACGCTGTCGGTGGAACTGACCTGCACCAACCAGAACCTGCCCCAACG
GCTGCGCCTGGGCGATATCTGCGTCGCCTGCGAAGGCACGCCGGAGTTCCTCGGTTTCCGCAATATCACCCCGCCGACGC
CGAGCTACGCGCCGCCGCTGAACCGCGATTTCCTCTGGAAACTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCC
AACGTCGACGCACTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAGCATGCGGCGAAGGTCAGCAA
GCGCCTGCTGGGCGGGCTCAAGGCGGTCCGCCACGAGCATGTCGACCGCCTGCATCGGGGCCTGCCGCTGCGCGGCTTGC
GTACCGAGCTGACGATCGATCCGGAAGGCTACATCGGCGAGGGCGACCTGTTCGTGTTCGCTTCGGTTCTGAACGAATTT
TTCGCGCTTTACGCCAGCATCAACTCCTACCACGAGTTGCGGGTGAGGAGCACACAGGGAGACGTGTACCAATGGAAACC
GCGCATGGGTTTGCAGCCCCTGCTGTAA