Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00286  |
| T6SS type | Type i3 |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon (RefSeq) | chromosome (NC_010717) |
| Location | 1586899..1620261 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PXO_RS07285 | 1582373..1583104 | - | 732 | WP_027704080.1 | hypothetical protein | ||
| PXO_RS07290 | 1583132..1585966 | - | 2835 | WP_012444487.1 | hypothetical protein | ||
| PXO_RS07295 | 1585963..1586892 | - | 930 | WP_012444488.1 | DUF4123 domain-containing protein | ||
| T6CP002871 | TssI | PXO_RS07300 | 1586901..1589663 | - | 2763 | WP_012444489.1 | type VI secretion system tip protein VgrG |
| PXO_RS25725 | 1590035..1590995 | + | 961 | pseudogene | transposase | ||
| PXO_RS07315 | 1591208..1592176 | - | 969 | WP_011258529.1 | IS5-like element ISXo1 family transposase | ||
| T6CP002872 | TssB | PXO_RS07320 (tssB) | 1592542..1593048 | + | 507 | WP_024711387.1 | type VI secretion system contractile sheath small subunit |
| T6CP002873 | TssC | PXO_RS07325 (tssC) | 1593041..1594555 | + | 1515 | WP_027703472.1 | type VI secretion system contractile sheath large subunit |
| T6CP002874 | TssD | PXO_RS07330 | 1594655..1595158 | + | 504 | WP_011259605.1 | type VI secretion system tube protein Hcp |
| T6CP012762 | TagJ | PXO_RS07335 | 1595194..1596027 | + | 834 | WP_011259604.1 | hypothetical protein |
| T6CP002875 | TssE | PXO_RS07340 (tssE) | 1596015..1596518 | + | 504 | WP_011259603.1 | type VI secretion system baseplate subunit TssE |
| T6CP002876 | TssF | PXO_RS07345 (tssF) | 1596522..1598399 | + | 1878 | WP_012444494.1 | type VI secretion system baseplate subunit TssF |
| T6CP002877 | TssG | PXO_RS07350 (tssG) | 1598363..1599373 | + | 1011 | WP_012444495.1 | type VI secretion system baseplate subunit TssG |
| T6CP002878 | TssH | PXO_RS07355 (tssH) | 1599406..1602111 | + | 2706 | WP_012444496.1 | type VI secretion system ATPase TssH |
| PXO_RS07360 | 1602300..1602797 | + | 498 | WP_027703476.1 | hypothetical protein | ||
| PXO_RS07365 | 1602863..1603357 | + | 495 | WP_125168760.1 | hypothetical protein | ||
| PXO_RS07370 | 1603419..1603604 | + | 186 | pseudogene | IS5/IS1182 family transposase | ||
| PXO_RS07375 | 1603745..1604203 | + | 459 | WP_011408952.1 | hypothetical protein | ||
| T6CP002879 | TssI | PXO_RS07380 (tssI) | 1604468..1606405 | + | 1938 | WP_012444497.1 | type VI secretion system tip protein VgrG |
| PXO_RS07385 | 1606414..1606953 | + | 540 | WP_011408951.1 | hypothetical protein | ||
| T6CP011685 | FHA | PXO_RS07390 (tagH) | 1606950..1608362 | + | 1413 | WP_012444498.1 | type VI secretion system-associated FHA domain protein TagH |
| T6CP002880 | TssK | PXO_RS07395 (tssK) | 1608359..1609696 | + | 1338 | WP_011408949.1 | type VI secretion system baseplate subunit TssK |
| T6CP002881 | TssL | PXO_RS07400 (icmH) | 1609698..1611014 | + | 1317 | WP_012444499.1 | type IVB secretion system protein IcmH/DotU |
| T6CP002882 | TssM | PXO_RS07405 (tssM) | 1611018..1614476 | + | 3459 | WP_012444500.1 | type VI secretion system membrane subunit TssM |
| PXO_RS07410 (tagF) | 1614473..1615120 | + | 648 | WP_041182626.1 | type VI secretion system-associated protein TagF | ||
| PXO_RS07415 | 1615117..1615839 | + | 723 | WP_011259593.1 | serine/threonine-protein phosphatase | ||
| PXO_RS07420 | 1615836..1618739 | + | 2904 | WP_012444503.1 | bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein | ||
| PXO_RS07425 | 1618736..1619062 | + | 327 | WP_012444504.1 | hypothetical protein | ||
| T6CP002883 | TssA | PXO_RS07430 (tssA) | 1619235..1620263 | - | 1029 | WP_012444505.1 | type VI secretion system protein TssA |
| PXO_RS07435 | 1620272..1621252 | - | 981 | WP_041182627.1 | LysR family transcriptional regulator | ||
| PXO_RS07440 | 1621366..1623825 | - | 2460 | WP_041182628.1 | two-component system VirA-like sensor kinase | ||
| PXO_RS07445 | 1623822..1624814 | - | 993 | WP_011259588.1 | c-type cytochrome |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|