Detailed information of component protein


Summary

Component ID T6CP011685
Component protein type FHA
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (471 a.a.); Nucleotide sequence (1413 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07390
Coordinate (Strand) 1606950..1608362 (+)
NCBI ID WP_012444498.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 3e-13 34..97
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-470 MSAVSPRLTLTVRDAQAVSGGTQAQASFAAEGGRIGRDATCDWVLEGEGVSRLHASVRHLDGVYFIEDHSTNGVLHNGVPLRAGFPVPLHAGDALRIDAFEIDVAVSGASVTAGAAATQNWNHAEPCTLSAMPLPQQSQHAPLEHDVFAALGASSMRATDTDPLALFATSFTLAGRQSDAAAFGLGHAPATAEAYRAPVAAPAAGGVVLPEHWDLTRSEFALPPAADPVADMQAPLPSAAVPIAPAAAAPAPTPTPTPTPLPLPLPLPTPVSQTRGAAVAVSAAAPSAAQPVVAHTPDTPELPALFAAMTAGLMDVLRARAAFKNSLRVPVTLIQRTENNPLKFAATVDEAVARLLAPPSPGYLTGAAAIEEAVEDIGRHQLALLAGMRAAFEHVFAQFDPARFEADTAGSALGSWGNRPWRRYAQHYRELLGDPDERFRRLFGEEFARAYEQQLARAKAQAQPTDGDRA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8220 - -


  Protein sequence: 471 a.a.    

>T6CP011685 NC_010717:1606950-1608362 [Xanthomonas oryzae pv. oryzae PXO99A] [FHA]
MSAVSPRLTLTVRDAQAVSGGTQAQASFAAEGGRIGRDATCDWVLEGEGVSRLHASVRHLDGVYFIEDHSTNGVLHNGVP
LRAGFPVPLHAGDALRIDAFEIDVAVSGASVTAGAAATQNWNHAEPCTLSAMPLPQQSQHAPLEHDVFAALGASSMRATD
TDPLALFATSFTLAGRQSDAAAFGLGHAPATAEAYRAPVAAPAAGGVVLPEHWDLTRSEFALPPAADPVADMQAPLPSAA
VPIAPAAAAPAPTPTPTPTPLPLPLPLPTPVSQTRGAAVAVSAAAPSAAQPVVAHTPDTPELPALFAAMTAGLMDVLRAR
AAFKNSLRVPVTLIQRTENNPLKFAATVDEAVARLLAPPSPGYLTGAAAIEEAVEDIGRHQLALLAGMRAAFEHVFAQFD
PARFEADTAGSALGSWGNRPWRRYAQHYRELLGDPDERFRRLFGEEFARAYEQQLARAKAQAQPTDGDRA*

  Nucleotide sequence: 1413 bp    

>T6CP011685 NC_010717:1606950-1608362 [Xanthomonas oryzae pv. oryzae PXO99A] [FHA]
ATGAGCGCGGTGTCACCCCGGCTGACGCTGACGGTTCGCGATGCGCAGGCGGTGTCGGGCGGCACACAAGCGCAGGCCAG
CTTCGCGGCAGAAGGCGGGCGCATCGGCCGCGACGCCACCTGCGATTGGGTGCTCGAAGGCGAGGGGGTGTCGCGCCTGC
ACGCCAGCGTGCGCCATCTCGATGGGGTGTATTTCATCGAAGACCACAGCACTAACGGCGTGTTGCATAACGGCGTGCCG
CTACGTGCCGGTTTTCCGGTGCCGCTGCATGCCGGCGACGCCTTGCGCATCGATGCCTTCGAGATCGACGTGGCGGTGTC
GGGCGCAAGCGTTACCGCTGGTGCAGCCGCGACGCAGAACTGGAATCACGCCGAACCGTGCACGCTGTCGGCAATGCCAC
TGCCGCAGCAGTCGCAGCACGCGCCGCTGGAGCATGATGTTTTCGCCGCGCTTGGGGCGTCGTCGATGCGGGCAACCGAC
ACCGACCCACTGGCATTGTTCGCCACCTCGTTCACGCTGGCCGGCCGCCAGAGCGATGCGGCGGCGTTCGGGCTGGGGCA
TGCGCCGGCAACGGCCGAGGCCTACCGTGCACCCGTGGCCGCGCCGGCTGCCGGCGGCGTTGTGTTGCCCGAGCACTGGG
ACCTGACACGCAGCGAATTTGCGCTGCCGCCGGCTGCCGATCCAGTGGCAGACATGCAAGCGCCACTGCCGTCCGCCGCA
GTGCCTATTGCCCCAGCGGCGGCAGCACCCGCACCGACGCCCACACCCACACCCACACCACTGCCACTGCCACTGCCACT
GCCAACGCCGGTCTCGCAAACGCGTGGCGCGGCAGTAGCGGTGAGCGCTGCCGCCCCCTCCGCGGCGCAGCCGGTAGTTG
CACACACGCCGGATACCCCCGAGCTGCCCGCGCTGTTCGCCGCCATGACCGCTGGCTTGATGGATGTCTTGCGCGCGCGT
GCGGCGTTCAAGAACAGCCTCCGCGTGCCGGTCACGCTGATCCAACGCACCGAGAACAATCCGCTCAAGTTCGCCGCGAC
GGTGGACGAGGCGGTCGCCCGCCTGTTGGCGCCGCCGAGCCCTGGGTATCTGACCGGTGCGGCCGCGATCGAAGAAGCGG
TGGAGGACATCGGGCGTCACCAGCTGGCCTTGTTGGCCGGCATGCGTGCCGCCTTCGAGCATGTGTTTGCCCAGTTCGAT
CCAGCGCGCTTCGAGGCAGACACCGCCGGCTCCGCGCTCGGTTCCTGGGGCAATCGGCCCTGGCGACGCTACGCGCAGCA
TTACCGCGAGTTGCTCGGCGATCCCGACGAGCGCTTCCGCCGCCTGTTCGGCGAAGAATTCGCCCGCGCCTACGAACAAC
AGCTGGCCCGTGCCAAGGCGCAGGCTCAACCCACAGACGGCGACCGAGCATGA