Detailed information of component protein


Summary

Component ID T6CP002873
Component protein type TssC
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (505 a.a.); Nucleotide sequence (1515 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07325
Coordinate (Strand) 1593041..1594555 (+)
NCBI ID WP_027703472.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.1e-133 75..376
VipB_2 PF18945.2 2.5e-43 387..498
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-504 MRNLMVTQHSAAQDLAEAQPQTSQTDDFAALLTREFRPRSERAGEEVRLAVRTLAEQVLERSDIISDDLAQTINAYVAEIDRKISEQLNLILHAPQFQALEGAWRGLHYLVSNTESDTQLKIRVLNVSKRELAKNLKRFKGTAWDQSPVFKKIYEAEYGQLGGEPYGCLIGDYHFDHSPQDVDTLRGISQIAAASHAPFIAAAGPGLMGMESWSELSNPRDLAKIFSTPDYAAWRSLRQSEDAKYLALAMPRTLARLPYGVKTDPVEAFDFEEDTQGADSSCYTWQNAAYAMAVNINRSFKQYGWCTRIRGVESGGAVEGLPTHTFPADDGGVDMKCPTEVAITDRRSAELDKMGLMPLVHRKNTDMAAFISAQSLGKPEEYDDPDATANAALSARLPYMFACCRFAHYLKCIVRDKIGSFSTRQQMQSWLTDWVMNYVDGDPANSSEETKARKPLAAAEVVVEEVEGNPGYYTSKFFLRPHYQLEGLTVSLRLVSRLPSAQAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9615 - -


  Protein sequence: 505 a.a.    

>T6CP002873 NC_010717:1593041-1594555 [Xanthomonas oryzae pv. oryzae PXO99A] [TssC]
MRNLMVTQHSAAQDLAEAQPQTSQTDDFAALLTREFRPRSERAGEEVRLAVRTLAEQVLERSDIISDDLAQTINAYVAEI
DRKISEQLNLILHAPQFQALEGAWRGLHYLVSNTESDTQLKIRVLNVSKRELAKNLKRFKGTAWDQSPVFKKIYEAEYGQ
LGGEPYGCLIGDYHFDHSPQDVDTLRGISQIAAASHAPFIAAAGPGLMGMESWSELSNPRDLAKIFSTPDYAAWRSLRQS
EDAKYLALAMPRTLARLPYGVKTDPVEAFDFEEDTQGADSSCYTWQNAAYAMAVNINRSFKQYGWCTRIRGVESGGAVEG
LPTHTFPADDGGVDMKCPTEVAITDRRSAELDKMGLMPLVHRKNTDMAAFISAQSLGKPEEYDDPDATANAALSARLPYM
FACCRFAHYLKCIVRDKIGSFSTRQQMQSWLTDWVMNYVDGDPANSSEETKARKPLAAAEVVVEEVEGNPGYYTSKFFLR
PHYQLEGLTVSLRLVSRLPSAQAA*

  Nucleotide sequence: 1515 bp    

>T6CP002873 NC_010717:1593041-1594555 [Xanthomonas oryzae pv. oryzae PXO99A] [TssC]
ATGCGTAACCTCATGGTGACCCAACATTCCGCTGCCCAAGACCTTGCCGAAGCGCAGCCGCAAACCAGTCAGACCGACGA
CTTTGCGGCCCTGCTGACCCGCGAATTCCGTCCGCGTAGCGAACGCGCCGGCGAAGAAGTGCGGTTGGCTGTGCGCACCT
TGGCCGAACAGGTGCTGGAACGCAGCGACATCATCAGCGACGACCTCGCGCAGACAATCAACGCGTATGTCGCCGAGATC
GACCGCAAGATCAGCGAGCAACTCAACCTCATCCTGCACGCCCCGCAATTCCAGGCGCTGGAGGGTGCATGGCGCGGACT
GCATTATCTGGTCAGCAACACCGAATCGGACACGCAGTTGAAGATCCGCGTGCTCAACGTGTCCAAAAGGGAGCTCGCCA
AGAACCTCAAGCGCTTCAAGGGCACCGCCTGGGACCAGAGCCCGGTATTCAAGAAAATTTACGAAGCCGAGTACGGCCAG
CTGGGTGGCGAACCCTACGGCTGTTTGATTGGCGATTACCACTTCGACCATAGCCCGCAGGATGTCGACACGCTGCGCGG
CATCAGCCAGATTGCCGCCGCCTCGCATGCGCCTTTCATCGCCGCTGCGGGTCCTGGCCTGATGGGGATGGAAAGCTGGA
GCGAGCTGTCCAACCCGCGCGATCTGGCCAAGATTTTTTCCACCCCCGATTACGCGGCTTGGCGTTCGTTGCGTCAGAGC
GAGGATGCCAAGTACCTGGCGCTTGCCATGCCGCGCACGCTGGCGCGGCTGCCGTACGGAGTCAAGACCGATCCGGTGGA
AGCGTTCGACTTCGAAGAAGACACCCAGGGCGCCGATTCGTCGTGCTACACCTGGCAAAACGCCGCCTACGCGATGGCGG
TCAACATCAACCGCTCCTTCAAGCAGTACGGTTGGTGCACCCGCATTCGCGGCGTGGAGTCGGGTGGGGCGGTGGAAGGC
CTGCCGACGCATACCTTCCCGGCCGACGATGGCGGTGTGGACATGAAGTGCCCGACCGAGGTCGCGATTACCGACCGCCG
TTCGGCCGAACTCGACAAGATGGGTCTGATGCCGCTGGTACATCGCAAGAACACCGATATGGCAGCCTTCATCAGCGCGC
AGTCGCTGGGCAAGCCCGAGGAATACGACGACCCGGATGCCACCGCCAACGCGGCGCTGAGCGCACGCCTGCCGTATATG
TTCGCTTGCTGCCGCTTCGCGCACTATTTGAAGTGCATCGTGCGCGACAAGATCGGCTCGTTCAGCACGCGCCAGCAGAT
GCAGAGCTGGTTGACCGATTGGGTGATGAACTACGTCGACGGCGACCCGGCCAATTCCAGCGAAGAAACCAAGGCGCGTA
AGCCATTGGCTGCTGCCGAAGTGGTCGTCGAAGAGGTCGAGGGCAACCCCGGCTACTACACCTCCAAGTTCTTCCTGCGC
CCGCATTACCAGCTCGAAGGCCTGACGGTATCGCTACGCCTGGTCTCGCGCTTGCCATCGGCGCAGGCAGCCTGA