Detailed information of component protein


Summary

Component ID T6CP002871
Component protein type TssI
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (921 a.a.); Nucleotide sequence (2763 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07300
Coordinate (Strand) 1586901..1589663 (-)
NCBI ID WP_012444489.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.9e-73 47..355
DUF2345 PF10106.11 2.7e-32 725..886
T6SS_Vgr PF13296.8 3.6e-26 584..683
Phage_base_V PF04717.14 2.4e-11 486..532
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-920 MDPVATVLSALSAAPRQQERLLRLHTPLGPDVLVAETLDGRESVDGGGFRFDVGALSANAGLPLDDLLGQPVLLELLTAESRTALRPFHGHVTAFERLGSNGGLARYRLVVEPWLALLAQRVDSYVFQDMSVVEIAESVFADYAGQGALAPAWRWELSDRSTYARRSLTTQYEETDFAFLSRLLAEEGIAYWFEHTGAADSATRGTHTLVLSDHNAAFADLGTVRYHRTDVTEQQDSVQQWVQAHRWRATSLSRASWDYRNRSLRLAGAEGTPLGDIGAEDVDTAGPYGWQDSTRGQRRAQQHLDAQQVTAQTIQGQGTWRQLAPGTRFGLRQHAVVAADAQFLCLQVRHQARNNLGAEVFDALEQALGAVAVAGAPLPPALAGLSGGYVPAQDEAAVEFYRNQFTAIPATATYRPQTEDGHGVRLHPKPTVVGTLSAIVVSDGDPVQSDRDHRIKVQFPFQRGADASSALAHPGGEDNAPGSASAWTWVRVMTPWAGDNWGGVVLPRKGQEVLVGFLEGDIDRPVVIGSVYNGRGQDDAAHNQVGGGGAGATGNAPAWFQGNAHGAVFTGFKSQALAQSQDGTGGYQQLRLDDTPGQGRAQLSTTQHASTLTLGHLKGGHDNLREGERGYGADLSTQAYGAVRAGQGLLLSSEPGNTQLAATGALSQLQQGSDLLKRLNDAARTQQAGLPSEPESLPTQDGLKTLQDHLQATHSGSAAGAIGGGTGEVPGWSAPVLLGSGQAGVMSLTPADQVWVSGTQTALLAGSALNWLSQGHLVLAVAGGLVLYTQGSDPVAGSPNQERGIALHAAQGTLSARAHRSTATLAAKTQVRIVSTTADVQLAAPTKHLLATAAGAYIKLDGDDIELGAPGVVAFKGGQQVLTGPQGSTASVSIPQAQFKGCDPTLVNAQLRSEAAADLG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9138 - -


  Protein sequence: 921 a.a.    

>T6CP002871 NC_010717:c1589663-1586901 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
MDPVATVLSALSAAPRQQERLLRLHTPLGPDVLVAETLDGRESVDGGGFRFDVGALSANAGLPLDDLLGQPVLLELLTAE
SRTALRPFHGHVTAFERLGSNGGLARYRLVVEPWLALLAQRVDSYVFQDMSVVEIAESVFADYAGQGALAPAWRWELSDR
STYARRSLTTQYEETDFAFLSRLLAEEGIAYWFEHTGAADSATRGTHTLVLSDHNAAFADLGTVRYHRTDVTEQQDSVQQ
WVQAHRWRATSLSRASWDYRNRSLRLAGAEGTPLGDIGAEDVDTAGPYGWQDSTRGQRRAQQHLDAQQVTAQTIQGQGTW
RQLAPGTRFGLRQHAVVAADAQFLCLQVRHQARNNLGAEVFDALEQALGAVAVAGAPLPPALAGLSGGYVPAQDEAAVEF
YRNQFTAIPATATYRPQTEDGHGVRLHPKPTVVGTLSAIVVSDGDPVQSDRDHRIKVQFPFQRGADASSALAHPGGEDNA
PGSASAWTWVRVMTPWAGDNWGGVVLPRKGQEVLVGFLEGDIDRPVVIGSVYNGRGQDDAAHNQVGGGGAGATGNAPAWF
QGNAHGAVFTGFKSQALAQSQDGTGGYQQLRLDDTPGQGRAQLSTTQHASTLTLGHLKGGHDNLREGERGYGADLSTQAY
GAVRAGQGLLLSSEPGNTQLAATGALSQLQQGSDLLKRLNDAARTQQAGLPSEPESLPTQDGLKTLQDHLQATHSGSAAG
AIGGGTGEVPGWSAPVLLGSGQAGVMSLTPADQVWVSGTQTALLAGSALNWLSQGHLVLAVAGGLVLYTQGSDPVAGSPN
QERGIALHAAQGTLSARAHRSTATLAAKTQVRIVSTTADVQLAAPTKHLLATAAGAYIKLDGDDIELGAPGVVAFKGGQQ
VLTGPQGSTASVSIPQAQFKGCDPTLVNAQLRSEAAADLG*

  Nucleotide sequence: 2763 bp    

>T6CP002871 NC_010717:c1589663-1586901 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
ATGGACCCGGTCGCCACAGTACTTTCCGCCCTCAGCGCCGCCCCGCGGCAGCAAGAACGCCTGCTGCGGTTGCATACCCC
GCTTGGCCCCGACGTGCTGGTCGCCGAGACGCTCGACGGCCGCGAGTCGGTCGATGGCGGCGGCTTCCGTTTCGACGTGG
GCGCACTATCGGCCAACGCCGGCTTGCCGCTGGACGACCTGCTCGGCCAGCCGGTGCTGCTGGAACTGCTCACCGCCGAG
TCGCGCACCGCGCTGCGCCCGTTCCACGGCCATGTCACCGCGTTCGAACGCCTCGGCAGCAACGGCGGCCTGGCGCGCTA
CCGGCTGGTGGTGGAGCCGTGGCTGGCGCTGCTGGCCCAGCGCGTGGACAGCTACGTGTTCCAGGACATGAGCGTGGTGG
AGATCGCCGAGAGCGTGTTCGCCGACTACGCCGGGCAAGGCGCGCTGGCGCCGGCGTGGCGCTGGGAGCTGTCCGACCGC
AGCACGTACGCCAGGCGCAGCCTGACCACGCAATACGAAGAGACCGACTTCGCGTTCCTGAGCCGGCTGCTGGCCGAGGA
AGGCATCGCCTATTGGTTCGAGCACACCGGCGCAGCCGACAGCGCCACGCGCGGCACGCACACGCTGGTGCTGTCGGACC
ATAACGCCGCCTTCGCCGACCTGGGCACGGTGCGCTACCACCGCACCGACGTCACCGAGCAGCAGGACAGCGTGCAGCAG
TGGGTACAGGCACATCGCTGGCGCGCGACCAGTCTGTCGCGGGCCAGCTGGGACTACCGCAACCGCAGCCTGCGCCTGGC
CGGTGCCGAAGGCACGCCGCTGGGCGACATCGGTGCCGAGGACGTGGACACCGCCGGCCCGTACGGCTGGCAGGACAGCA
CCCGTGGCCAGCGCCGCGCGCAGCAGCATCTGGATGCGCAGCAGGTGACGGCGCAGACCATCCAGGGCCAGGGGACCTGG
CGGCAACTGGCACCGGGCACGCGTTTCGGGCTGCGCCAGCATGCGGTCGTGGCGGCCGATGCGCAGTTCCTGTGCCTGCA
GGTGCGGCACCAGGCGCGCAACAATCTGGGCGCGGAGGTGTTCGACGCGCTGGAGCAGGCGCTGGGCGCGGTGGCGGTGG
CCGGCGCGCCGCTGCCGCCGGCGCTGGCAGGCCTGAGCGGCGGATATGTGCCGGCGCAGGATGAGGCGGCGGTAGAGTTC
TACCGCAACCAGTTCACCGCCATACCGGCCACCGCGACCTACCGGCCGCAAACCGAGGACGGCCACGGCGTGCGCCTGCA
TCCCAAGCCAACGGTCGTCGGCACGCTGAGCGCGATCGTGGTCAGCGACGGCGACCCGGTGCAGTCCGACCGCGACCACC
GGATCAAGGTGCAGTTCCCGTTCCAGCGCGGGGCCGACGCCAGCAGCGCGCTGGCGCATCCCGGGGGCGAGGACAACGCG
CCGGGCAGCGCCTCGGCGTGGACCTGGGTGCGGGTGATGACGCCGTGGGCCGGGGACAACTGGGGCGGCGTGGTGCTGCC
GCGCAAGGGCCAGGAAGTGCTGGTGGGGTTCCTGGAAGGGGACATCGACCGGCCGGTGGTGATCGGCAGCGTGTACAACG
GGCGCGGCCAGGACGACGCGGCGCACAACCAGGTCGGCGGCGGCGGGGCCGGAGCCACCGGCAATGCGCCGGCGTGGTTC
CAGGGCAACGCGCACGGCGCGGTGTTCACCGGGTTCAAGAGCCAGGCGCTGGCGCAGAGCCAGGACGGCACCGGCGGCTA
CCAGCAGCTGCGGCTGGACGACACGCCCGGCCAGGGCCGCGCGCAGCTGTCGACCACCCAGCACGCCAGCACCTTGACCC
TGGGCCACCTGAAGGGCGGCCACGACAACCTGCGCGAAGGCGAGCGCGGGTACGGGGCGGACCTGTCCACGCAGGCCTAC
GGCGCGGTGCGCGCCGGCCAGGGCCTGCTGCTGAGCAGCGAGCCGGGCAACACCCAACTGGCCGCCACCGGCGCGCTGAG
CCAACTGCAGCAGGGCAGCGACCTGCTCAAGCGCCTCAACGACGCCGCCCGCACCCAGCAGGCGGGCCTACCGAGCGAAC
CGGAGTCCCTGCCGACCCAGGACGGCCTGAAGACCTTGCAGGACCACCTGCAGGCCACCCACAGCGGCAGCGCGGCCGGC
GCGATCGGCGGTGGCACCGGCGAGGTGCCCGGCTGGAGCGCCCCAGTGCTGCTGGGCAGCGGCCAGGCCGGCGTGATGAG
CCTGACCCCGGCCGACCAGGTGTGGGTGTCGGGCACCCAGACCGCGCTGCTGGCCGGCAGCGCACTGAACTGGCTCAGCC
AGGGCCACCTGGTGCTGGCGGTGGCCGGCGGGCTGGTGCTGTACACCCAGGGCAGCGACCCGGTCGCCGGCAGCCCCAAC
CAGGAGCGCGGCATCGCCCTGCACGCCGCGCAAGGCACGCTCAGCGCTCGCGCGCACAGGAGCACCGCCACCCTGGCCGC
CAAGACCCAGGTGCGCATCGTCAGCACCACCGCCGACGTCCAGCTCGCCGCGCCGACCAAGCACCTGCTGGCCACCGCGG
CCGGCGCCTACATCAAGCTGGACGGCGACGATATCGAACTGGGCGCGCCGGGGGTGGTCGCGTTCAAGGGCGGGCAGCAG
GTGTTGACCGGGCCGCAGGGCAGCACCGCGTCGGTGTCCATCCCGCAGGCGCAGTTCAAGGGCTGCGATCCGACATTGGT
CAATGCGCAGCTTCGCTCCGAAGCCGCCGCAGACCTAGGGTGA