Detailed information of component protein


Summary

Component ID T6CP002881
Component protein type TssL
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07400
Coordinate (Strand) 1609698..1611014 (+)
NCBI ID WP_012444499.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.6e-64 60..260
OmpA PF00691.22 3.3e-12 329..419
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-236 MSKTVDQHDDDATVVRSATPAPRPAASMPPRQAPTRTRRPPDLDAAMRATPGAMQGNAVVRAATPLLLLAVQLRHSAQTPEIATLRENCVTRLQHFEQELRQQGTDDKTGIAARYVLCTLLDEAVLAAPWGEASGWSQRTLLVTFHGETYGGAKVFDLLDRLARDPARHLDLLELLYLALALGFGGRYRVEQGGGARLADRQAELYQLIQRQRLPAPAELSPHWQGAQAPLLRNAA
Transmembrane helix 237-259 ATPLWIAALASLCIVLLAFVWLH
Inside 260-438 ARLNTLTAPISAQLARIGLERVALPIPAAVRAATIPALAPLLAAEQRAGLLTVHTDGDGRSTVRLASASMFPSGSAELDADQTHLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVLAAGLRDRRRVQTSGAGDSQPIALPPQLPGNRARNRRVEILLIPET


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8341 - -


  Protein sequence: 439 a.a.    

>T6CP002881 NC_010717:1609698-1611014 [Xanthomonas oryzae pv. oryzae PXO99A] [TssL]
MSKTVDQHDDDATVVRSATPAPRPAASMPPRQAPTRTRRPPDLDAAMRATPGAMQGNAVVRAATPLLLLAVQLRHSAQTP
EIATLRENCVTRLQHFEQELRQQGTDDKTGIAARYVLCTLLDEAVLAAPWGEASGWSQRTLLVTFHGETYGGAKVFDLLD
RLARDPARHLDLLELLYLALALGFGGRYRVEQGGGARLADRQAELYQLIQRQRLPAPAELSPHWQGAQAPLLRNAAATPL
WIAALASLCIVLLAFVWLHARLNTLTAPISAQLARIGLERVALPIPAAVRAATIPALAPLLAAEQRAGLLTVHTDGDGRS
TVRLASASMFPSGSAELDADQTHLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVLAAGLRDR
RRVQTSGAGDSQPIALPPQLPGNRARNRRVEILLIPET*

  Nucleotide sequence: 1317 bp    

>T6CP002881 NC_010717:1609698-1611014 [Xanthomonas oryzae pv. oryzae PXO99A] [TssL]
ATGAGCAAGACGGTCGACCAGCACGACGACGATGCCACCGTGGTCCGCAGCGCGACGCCGGCGCCGCGGCCCGCCGCATC
CATGCCGCCCCGCCAAGCACCGACGCGGACGAGGCGACCGCCCGATCTGGATGCCGCCATGCGCGCGACGCCAGGTGCGA
TGCAGGGCAATGCGGTGGTGCGCGCAGCCACGCCGCTGCTGCTGCTGGCGGTGCAGTTGCGACACTCCGCGCAGACGCCG
GAGATCGCCACCTTGCGCGAGAACTGCGTCACGCGCCTGCAGCACTTCGAGCAGGAGCTGCGGCAACAGGGCACCGACGA
CAAGACCGGCATCGCCGCGCGCTACGTGCTGTGCACGTTGCTCGACGAAGCGGTGCTGGCCGCGCCCTGGGGCGAGGCCA
GCGGCTGGTCGCAGCGCACTTTGCTGGTGACGTTCCACGGCGAAACCTATGGCGGCGCCAAGGTCTTCGACCTGCTCGAT
CGGCTGGCACGCGATCCGGCGCGGCACCTGGACCTGCTGGAGCTGCTGTACCTGGCATTGGCGCTGGGCTTTGGTGGCCG
CTATCGGGTGGAGCAGGGTGGTGGGGCACGGCTGGCCGATCGCCAGGCCGAGCTCTACCAACTCATCCAGCGTCAGCGCT
TGCCTGCGCCTGCCGAGTTGTCGCCGCATTGGCAAGGCGCGCAGGCGCCGTTGCTGCGCAATGCAGCGGCCACGCCGCTG
TGGATCGCGGCGCTGGCCTCGCTGTGCATCGTGTTGCTGGCGTTCGTGTGGTTGCATGCGCGCCTCAATACGCTGACCGC
GCCGATCAGCGCGCAGCTGGCGCGCATCGGCCTGGAGCGGGTGGCGTTGCCGATCCCGGCGGCAGTCAGAGCGGCGACCA
TACCGGCGCTTGCACCGCTGCTGGCGGCCGAGCAACGCGCAGGGTTGCTGACCGTCCACACCGACGGCGATGGCCGCAGC
ACCGTGCGCCTGGCCAGCGCATCCATGTTCCCCAGCGGCAGCGCGGAGTTGGATGCCGATCAGACCCACCTGCTCGAACG
CGTTGCTGCGGCGCTTGAACAGGTGCCGGGGCGGGTGGTGGTGGTGGGGCATACCGACGATCAGCCGGTGCGCTCGCTGC
GCTTCAAGGACAACTTCGCCTTATCCGCACGTCGCGCAGAGAGCGTGGGCGCCGTGTTGGCGGCAGGCCTGCGCGATCGA
CGCCGGGTACAGACCAGTGGCGCGGGCGATTCCCAGCCCATCGCGCTACCGCCGCAATTGCCCGGCAACCGTGCGCGCAA
TCGGCGCGTCGAGATCCTGTTGATTCCCGAGACCTGA