Detailed information of component protein


Summary

Component ID T6CP002880
Component protein type TssK
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (446 a.a.); Nucleotide sequence (1338 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07395
Coordinate (Strand) 1608359..1609696 (+)
NCBI ID WP_011408949.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.4e-146 19..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-445 MTPYNKVIWSEGLFLRPQHLQQQERYLERYMELHAGALRPHAWGFSVLELEPELLSIGKLGIRRARGCFPDGTPFSIPDRDPAPPPLDVPANCRDQVVSLALPLRATTQPDSTWPDGDGSRLARYRVGEAEVGDSSGSIAGTVLLEVGVLASRLRLQSEPGEGLVEVPMARIVECRADRRVILDDAFIPTAIRIEGAARLSMLLAELLGLLHQRGQALADRVAGSDRRGVAEIADVLMLQVINRYQPLVAHWASAPLEHPEALYCVLLGMAGELATFTRASKRSGPFPPYAHDALQASFEPVVVSLRESLSAVLEQSAIAVPLQQRKYGVWVGMVPDPALLDAAAFVLAVKADLRAEDLRKRLPAESKIGPVEKIRDLVNLQLPGVAVSALAMAPRQVPYHAGCAYFELDRQSSLWKTLRTSGGVALHFGSGFPGLELELWAVRN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 446 a.a.    

>T6CP002880 NC_010717:1608359-1609696 [Xanthomonas oryzae pv. oryzae PXO99A] [TssK]
MTPYNKVIWSEGLFLRPQHLQQQERYLERYMELHAGALRPHAWGFSVLELEPELLSIGKLGIRRARGCFPDGTPFSIPDR
DPAPPPLDVPANCRDQVVSLALPLRATTQPDSTWPDGDGSRLARYRVGEAEVGDSSGSIAGTVLLEVGVLASRLRLQSEP
GEGLVEVPMARIVECRADRRVILDDAFIPTAIRIEGAARLSMLLAELLGLLHQRGQALADRVAGSDRRGVAEIADVLMLQ
VINRYQPLVAHWASAPLEHPEALYCVLLGMAGELATFTRASKRSGPFPPYAHDALQASFEPVVVSLRESLSAVLEQSAIA
VPLQQRKYGVWVGMVPDPALLDAAAFVLAVKADLRAEDLRKRLPAESKIGPVEKIRDLVNLQLPGVAVSALAMAPRQVPY
HAGCAYFELDRQSSLWKTLRTSGGVALHFGSGFPGLELELWAVRN*

  Nucleotide sequence: 1338 bp    

>T6CP002880 NC_010717:1608359-1609696 [Xanthomonas oryzae pv. oryzae PXO99A] [TssK]
ATGACCCCTTACAACAAGGTGATCTGGAGCGAGGGCCTGTTCCTGCGCCCGCAGCACCTGCAACAACAGGAGCGCTATCT
GGAGCGCTACATGGAACTGCATGCCGGTGCGCTCCGGCCGCATGCGTGGGGTTTCAGCGTACTGGAGCTGGAGCCGGAAT
TGCTGTCCATCGGCAAGCTCGGCATCCGGCGCGCCCGCGGCTGCTTTCCCGATGGCACGCCGTTTTCCATTCCCGATCGC
GATCCGGCACCGCCGCCGTTGGACGTGCCGGCCAACTGCCGCGACCAGGTGGTGAGTCTGGCGCTGCCGCTGCGCGCGAC
CACGCAGCCCGATAGCACCTGGCCGGATGGCGACGGCAGCCGGCTGGCCCGTTATCGCGTGGGCGAAGCGGAGGTCGGCG
ATTCGTCCGGCAGCATCGCCGGCACGGTCCTGCTGGAAGTCGGCGTGCTGGCCAGTCGCCTACGCCTGCAGTCCGAACCG
GGGGAGGGGCTGGTGGAGGTGCCGATGGCGCGCATTGTCGAGTGCCGCGCCGATCGACGGGTGATTCTCGATGATGCCTT
CATCCCGACCGCCATCCGCATCGAAGGCGCCGCGCGGTTGTCCATGCTGCTGGCCGAATTGCTTGGGCTATTGCATCAAC
GCGGCCAGGCGCTGGCCGACCGCGTGGCCGGCAGCGACCGTCGCGGCGTGGCGGAAATCGCAGACGTGCTGATGTTGCAG
GTGATCAATCGCTACCAGCCGCTGGTGGCGCATTGGGCAAGCGCGCCGCTGGAGCATCCGGAAGCGCTGTATTGCGTGCT
GCTGGGGATGGCTGGCGAACTCGCGACCTTCACCCGTGCCAGTAAACGCAGCGGGCCATTTCCGCCGTACGCACACGATG
CGCTGCAGGCGAGCTTCGAGCCGGTGGTGGTGTCCTTGCGCGAAAGCTTGAGCGCGGTGCTCGAACAGTCGGCGATTGCC
GTGCCCTTGCAGCAACGCAAATACGGCGTGTGGGTGGGCATGGTGCCCGATCCGGCCTTGCTGGACGCGGCGGCCTTCGT
GCTGGCAGTCAAGGCGGATCTGCGCGCCGAGGATCTGCGCAAGCGGCTACCCGCCGAATCGAAGATCGGCCCGGTGGAGA
AGATTCGCGACCTGGTGAACCTGCAACTGCCCGGGGTGGCCGTGAGTGCGCTGGCGATGGCACCGCGGCAGGTGCCGTAT
CACGCCGGCTGCGCCTACTTCGAACTCGATCGGCAATCGTCGCTGTGGAAGACGCTGCGCACGTCCGGTGGCGTGGCGCT
GCATTTCGGCAGTGGTTTTCCCGGCCTGGAACTTGAGTTGTGGGCGGTGAGGAATTGA