Detailed information of component protein


Summary

Component ID T6CP002876
Component protein type TssF
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (626 a.a.); Nucleotide sequence (1878 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07345
Coordinate (Strand) 1596522..1598399 (+)
NCBI ID WP_012444494.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.4e-223 1..622
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-625 MDPRLLHHYNRELQHVREMGAEFAQAYPKVAGRLGMSGIECADPYVERLLEGFAFLSARVQVELEAQQPAFAQHLTEMLYPHFLSPVPSMAVVELQPEQGEGIGPAGHVVPRGSALRSLIGHGDRTACEYRTAHAVTLLPLRLTAASYLTSPAALATLGVPVEPRARAGLRLVFNVDPGLRLDMLALDTLPIFITGADGLAGTLHEQLHANALGFVVRTRSADGQVLTRTFGPEHLQPQGFDDEQALLPRSERSFSGYRLLQEYFACPERFLFTAFDGLAQVLTRAACAEFEMLVWFDRSVERLDNAVDASNFRLHCTPAINLFPRRGDRIHLHPGISEHHVLADRTRPMDFEIHGVEQVEGFGDGNAPMQRFEPFYGAQPRSWHERRSAFYALRRQPRRLSTGQRRTGPRSSYVGSEVFLSLVDGDQAPYSHQLRQLGMQLWCSNRDLPLHMPVGKSSTDFVLDDGGPVASIRCVAGPTRPRSGVTAGDTRWRLISHLQLNYLSLLDAGDDGATALREMLTLYHDPHDAAARRQVDGVRRIASRPIVRRIPVPGPATYGRGLEITLTCDDAAFEGQGVYLLASVLRHVFARQASLNSFTETVLCTPERNEVARWPAHLGNRPIL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9861 - -


  Protein sequence: 626 a.a.    

>T6CP002876 NC_010717:1596522-1598399 [Xanthomonas oryzae pv. oryzae PXO99A] [TssF]
MDPRLLHHYNRELQHVREMGAEFAQAYPKVAGRLGMSGIECADPYVERLLEGFAFLSARVQVELEAQQPAFAQHLTEMLY
PHFLSPVPSMAVVELQPEQGEGIGPAGHVVPRGSALRSLIGHGDRTACEYRTAHAVTLLPLRLTAASYLTSPAALATLGV
PVEPRARAGLRLVFNVDPGLRLDMLALDTLPIFITGADGLAGTLHEQLHANALGFVVRTRSADGQVLTRTFGPEHLQPQG
FDDEQALLPRSERSFSGYRLLQEYFACPERFLFTAFDGLAQVLTRAACAEFEMLVWFDRSVERLDNAVDASNFRLHCTPA
INLFPRRGDRIHLHPGISEHHVLADRTRPMDFEIHGVEQVEGFGDGNAPMQRFEPFYGAQPRSWHERRSAFYALRRQPRR
LSTGQRRTGPRSSYVGSEVFLSLVDGDQAPYSHQLRQLGMQLWCSNRDLPLHMPVGKSSTDFVLDDGGPVASIRCVAGPT
RPRSGVTAGDTRWRLISHLQLNYLSLLDAGDDGATALREMLTLYHDPHDAAARRQVDGVRRIASRPIVRRIPVPGPATYG
RGLEITLTCDDAAFEGQGVYLLASVLRHVFARQASLNSFTETVLCTPERNEVARWPAHLGNRPIL*

  Nucleotide sequence: 1878 bp    

>T6CP002876 NC_010717:1596522-1598399 [Xanthomonas oryzae pv. oryzae PXO99A] [TssF]
ATGGATCCGCGCCTGCTCCATCACTACAACCGCGAGTTGCAGCATGTGCGCGAGATGGGTGCGGAATTCGCGCAGGCGTA
TCCGAAAGTGGCGGGCCGGCTTGGGATGAGCGGTATCGAGTGCGCCGACCCGTATGTCGAACGTCTGCTGGAAGGGTTTG
CCTTCCTGTCTGCGCGCGTGCAGGTCGAACTCGAAGCCCAGCAGCCTGCATTCGCGCAGCATCTGACGGAAATGCTGTAT
CCACATTTCCTGTCGCCGGTGCCGTCGATGGCCGTGGTGGAGCTGCAACCGGAGCAAGGCGAGGGCATCGGCCCAGCGGG
GCATGTGGTGCCGCGCGGCAGCGCGTTGCGCTCGTTGATCGGGCATGGCGACCGCACCGCCTGCGAATATCGCACCGCGC
ACGCGGTGACGCTGTTGCCGCTGCGCCTGACTGCCGCCAGTTATCTCACCTCGCCGGCAGCGCTGGCCACGCTCGGTGTG
CCGGTCGAGCCGCGTGCGCGCGCCGGCCTTCGCCTGGTCTTCAACGTCGACCCCGGGCTGCGCCTGGACATGCTGGCGCT
GGACACATTGCCGATCTTCATCACCGGCGCCGATGGGTTGGCCGGCACCCTCCACGAACAACTGCATGCCAATGCGTTGG
GATTTGTGGTGCGTACCCGCTCCGCGGATGGGCAGGTGCTGACGCGCACCTTCGGTCCCGAGCATCTGCAGCCGCAGGGC
TTCGATGACGAGCAGGCGCTGCTGCCGCGCAGCGAACGCTCTTTCAGCGGCTATCGCCTGCTGCAGGAATATTTTGCCTG
CCCCGAGCGTTTCCTGTTTACCGCCTTCGATGGCCTGGCGCAGGTGCTGACGCGAGCGGCGTGCGCCGAATTCGAGATGT
TGGTGTGGTTCGACCGCAGCGTCGAGCGGCTCGATAACGCGGTGGACGCAAGTAACTTCCGCCTGCATTGCACCCCGGCG
ATCAACCTGTTTCCTCGGCGCGGTGATCGTATCCATCTGCATCCCGGCATCTCCGAGCACCACGTGCTGGCCGACCGCAC
GCGGCCGATGGACTTCGAGATTCATGGCGTGGAGCAGGTCGAAGGCTTCGGCGATGGCAATGCGCCAATGCAGCGTTTCG
AGCCGTTCTATGGCGCGCAGCCGCGCAGTTGGCATGAGCGGCGTTCGGCATTTTATGCCTTGCGACGGCAGCCGCGGCGG
CTGTCGACGGGACAGCGTCGTACCGGGCCGCGCTCGAGCTACGTTGGCAGCGAGGTGTTCCTGTCGCTGGTCGATGGCGA
CCAGGCGCCGTATTCGCACCAACTGCGGCAACTGGGCATGCAGCTGTGGTGCAGCAACCGCGATCTGCCGCTGCATATGC
CGGTGGGCAAATCCAGCACCGACTTCGTCCTCGACGATGGCGGCCCGGTGGCGTCGATCCGCTGCGTTGCAGGTCCAACG
CGACCGCGCTCGGGCGTGACCGCCGGCGATACCCGCTGGCGCCTGATCAGCCATCTGCAGTTGAACTATCTCTCGCTGCT
GGATGCCGGCGACGACGGTGCCACCGCATTGCGCGAGATGCTCACGCTGTACCACGACCCGCACGATGCCGCTGCGCGAC
GACAGGTAGACGGCGTGCGCCGCATCGCTTCGCGCCCGATCGTACGGCGCATTCCGGTGCCGGGCCCGGCCACCTATGGC
CGCGGGCTTGAGATCACCTTGACCTGCGACGACGCGGCCTTTGAAGGGCAGGGCGTCTATCTGCTTGCCTCGGTGCTGCG
GCATGTCTTTGCGCGCCAGGCATCGCTCAATTCCTTTACCGAAACCGTGCTATGCACGCCCGAACGCAACGAGGTCGCTC
GATGGCCAGCCCATCTCGGCAATCGGCCGATCCTGTAG