Detailed information of component protein
Summary
| Component ID | T6CP002877 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS00286  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (337 a.a.); Nucleotide sequence (1011 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PXO_RS07350 |
| Coordinate (Strand) | 1598363..1599373 (+) |
| NCBI ID | WP_012444495.1 |
| RefSeq | NC_010717 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 7.5e-100 | 21..320 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-336 | MASPSRQSADPVALFARLDAQPQAFELFEALRWLECAHPAQPRLGQAARPLEEPVRLGQRASLEFPPRDIDSVHAGVDGRPPTLRTLSLGLFGPHGALPLHLTEHAIERESAGDPTFAAFADMFHHRMIALWYRAWADARPTVQMDRVGDDRFGARLDALTGVDQPALRDRDAMPVAARRHFAGRFIAQARNAEGLRAVLTGLFDVPVQVQEFVANWLTLPEEGRLRMGRAAARIGRDATLGASARNAQHRFRLRIGPLEIARYREFLPGGQALDVLTAAVRGYIGDEQAWDLQLVLAREDVPLPVLGQGQRIGLSLWLGHYRRPLDADQLVLTSP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9748 | - | - |
Protein sequence: 337 a.a.
>T6CP002877 NC_010717:1598363-1599373 [Xanthomonas oryzae pv. oryzae PXO99A] [TssG]
MASPSRQSADPVALFARLDAQPQAFELFEALRWLECAHPAQPRLGQAARPLEEPVRLGQRASLEFPPRDIDSVHAGVDGR
PPTLRTLSLGLFGPHGALPLHLTEHAIERESAGDPTFAAFADMFHHRMIALWYRAWADARPTVQMDRVGDDRFGARLDAL
TGVDQPALRDRDAMPVAARRHFAGRFIAQARNAEGLRAVLTGLFDVPVQVQEFVANWLTLPEEGRLRMGRAAARIGRDAT
LGASARNAQHRFRLRIGPLEIARYREFLPGGQALDVLTAAVRGYIGDEQAWDLQLVLAREDVPLPVLGQGQRIGLSLWLG
HYRRPLDADQLVLTSP*
MASPSRQSADPVALFARLDAQPQAFELFEALRWLECAHPAQPRLGQAARPLEEPVRLGQRASLEFPPRDIDSVHAGVDGR
PPTLRTLSLGLFGPHGALPLHLTEHAIERESAGDPTFAAFADMFHHRMIALWYRAWADARPTVQMDRVGDDRFGARLDAL
TGVDQPALRDRDAMPVAARRHFAGRFIAQARNAEGLRAVLTGLFDVPVQVQEFVANWLTLPEEGRLRMGRAAARIGRDAT
LGASARNAQHRFRLRIGPLEIARYREFLPGGQALDVLTAAVRGYIGDEQAWDLQLVLAREDVPLPVLGQGQRIGLSLWLG
HYRRPLDADQLVLTSP*
Nucleotide sequence: 1011 bp
>T6CP002877 NC_010717:1598363-1599373 [Xanthomonas oryzae pv. oryzae PXO99A] [TssG]
ATGGCCAGCCCATCTCGGCAATCGGCCGATCCTGTAGCGCTGTTCGCGCGGCTGGATGCGCAACCGCAGGCCTTCGAGCT
ATTCGAAGCGCTGCGGTGGCTGGAGTGCGCGCATCCGGCGCAACCGCGTCTGGGCCAGGCAGCACGGCCGTTGGAAGAGC
CTGTGCGTTTGGGCCAGCGCGCCTCGCTGGAATTTCCTCCGCGCGACATCGACAGCGTGCACGCTGGCGTTGACGGTCGC
CCGCCGACCCTGCGCACGCTGTCGCTGGGCTTGTTCGGCCCGCATGGTGCGCTGCCGTTGCACCTGACCGAGCACGCCAT
CGAACGTGAAAGCGCTGGCGATCCCACCTTTGCGGCCTTTGCAGACATGTTTCACCATCGCATGATTGCGCTGTGGTATC
GCGCCTGGGCCGATGCGCGACCCACCGTGCAGATGGATCGCGTGGGCGATGACCGCTTCGGCGCGCGGCTGGATGCGTTA
ACCGGTGTGGACCAACCTGCGTTACGTGATCGCGATGCGATGCCGGTGGCTGCACGCCGCCACTTCGCCGGTCGCTTCAT
TGCCCAGGCGCGCAATGCGGAAGGCTTGCGTGCTGTGCTGACCGGCCTGTTCGACGTCCCGGTGCAGGTGCAGGAATTCG
TTGCCAACTGGTTGACGCTGCCCGAGGAAGGGCGATTGCGGATGGGACGTGCTGCTGCGCGTATCGGGCGTGACGCCACG
CTTGGCGCATCGGCGCGCAACGCGCAGCATCGCTTCCGCCTGCGGATCGGCCCCTTGGAGATCGCCCGCTACCGCGAGTT
CCTGCCGGGCGGCCAGGCCCTGGACGTACTGACCGCCGCAGTACGCGGCTACATCGGCGACGAGCAGGCCTGGGACTTAC
AACTCGTGCTGGCGCGCGAAGACGTCCCGTTGCCAGTCCTGGGGCAGGGCCAGCGCATCGGCCTGTCGCTGTGGCTCGGC
CACTATCGCCGCCCGCTCGATGCCGACCAGCTCGTGCTTACGTCGCCCTGA
ATGGCCAGCCCATCTCGGCAATCGGCCGATCCTGTAGCGCTGTTCGCGCGGCTGGATGCGCAACCGCAGGCCTTCGAGCT
ATTCGAAGCGCTGCGGTGGCTGGAGTGCGCGCATCCGGCGCAACCGCGTCTGGGCCAGGCAGCACGGCCGTTGGAAGAGC
CTGTGCGTTTGGGCCAGCGCGCCTCGCTGGAATTTCCTCCGCGCGACATCGACAGCGTGCACGCTGGCGTTGACGGTCGC
CCGCCGACCCTGCGCACGCTGTCGCTGGGCTTGTTCGGCCCGCATGGTGCGCTGCCGTTGCACCTGACCGAGCACGCCAT
CGAACGTGAAAGCGCTGGCGATCCCACCTTTGCGGCCTTTGCAGACATGTTTCACCATCGCATGATTGCGCTGTGGTATC
GCGCCTGGGCCGATGCGCGACCCACCGTGCAGATGGATCGCGTGGGCGATGACCGCTTCGGCGCGCGGCTGGATGCGTTA
ACCGGTGTGGACCAACCTGCGTTACGTGATCGCGATGCGATGCCGGTGGCTGCACGCCGCCACTTCGCCGGTCGCTTCAT
TGCCCAGGCGCGCAATGCGGAAGGCTTGCGTGCTGTGCTGACCGGCCTGTTCGACGTCCCGGTGCAGGTGCAGGAATTCG
TTGCCAACTGGTTGACGCTGCCCGAGGAAGGGCGATTGCGGATGGGACGTGCTGCTGCGCGTATCGGGCGTGACGCCACG
CTTGGCGCATCGGCGCGCAACGCGCAGCATCGCTTCCGCCTGCGGATCGGCCCCTTGGAGATCGCCCGCTACCGCGAGTT
CCTGCCGGGCGGCCAGGCCCTGGACGTACTGACCGCCGCAGTACGCGGCTACATCGGCGACGAGCAGGCCTGGGACTTAC
AACTCGTGCTGGCGCGCGAAGACGTCCCGTTGCCAGTCCTGGGGCAGGGCCAGCGCATCGGCCTGTCGCTGTGGCTCGGC
CACTATCGCCGCCCGCTCGATGCCGACCAGCTCGTGCTTACGTCGCCCTGA