Detailed information of component protein
Summary
| Component ID | T6CP002883 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS00286  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (343 a.a.); Nucleotide sequence (1029 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PXO_RS07430 |
| Coordinate (Strand) | 1619235..1620263 (-) |
| NCBI ID | WP_012444505.1 |
| RefSeq | NC_010717 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpA_N | PF06812.14 | 5.9e-29 | 9..132 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-342 | MQIDNAPLLRPVDEQVPSGPNLEYTPEFQSLEELARPRQERALGAGVLVPDAPQWRQVAESAEHLLGRSKDLRLGILLSIARLHQDGLVGWSSGVGLLRQLLEQFWGDVHPHLDADEDNDPTERVNAIAALADSERTLTQLRNVRLFKGLHPGHFSLRDLRIVQGTLKLAAEDASEIPEPAAIDACLRDCPLEALLDLDAALAAAQDDIAAIAGVFAERTPGHGPELAPLTQDLDELRAFLRPYVSERSGSPAEPTEHAAPGADTVRTSTPRAHAVEHPDEVRRMLDQLCDYYARREPSSPVPLLLRRAQRLVGLDFTALIRDLAPRAIEELQVVSGQDHSD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9586 | - | - |
Protein sequence: 343 a.a.
>T6CP002883 NC_010717:c1620263-1619235 [Xanthomonas oryzae pv. oryzae PXO99A] [TssA]
MQIDNAPLLRPVDEQVPSGPNLEYTPEFQSLEELARPRQERALGAGVLVPDAPQWRQVAESAEHLLGRSKDLRLGILLSI
ARLHQDGLVGWSSGVGLLRQLLEQFWGDVHPHLDADEDNDPTERVNAIAALADSERTLTQLRNVRLFKGLHPGHFSLRDL
RIVQGTLKLAAEDASEIPEPAAIDACLRDCPLEALLDLDAALAAAQDDIAAIAGVFAERTPGHGPELAPLTQDLDELRAF
LRPYVSERSGSPAEPTEHAAPGADTVRTSTPRAHAVEHPDEVRRMLDQLCDYYARREPSSPVPLLLRRAQRLVGLDFTAL
IRDLAPRAIEELQVVSGQDHSD*
MQIDNAPLLRPVDEQVPSGPNLEYTPEFQSLEELARPRQERALGAGVLVPDAPQWRQVAESAEHLLGRSKDLRLGILLSI
ARLHQDGLVGWSSGVGLLRQLLEQFWGDVHPHLDADEDNDPTERVNAIAALADSERTLTQLRNVRLFKGLHPGHFSLRDL
RIVQGTLKLAAEDASEIPEPAAIDACLRDCPLEALLDLDAALAAAQDDIAAIAGVFAERTPGHGPELAPLTQDLDELRAF
LRPYVSERSGSPAEPTEHAAPGADTVRTSTPRAHAVEHPDEVRRMLDQLCDYYARREPSSPVPLLLRRAQRLVGLDFTAL
IRDLAPRAIEELQVVSGQDHSD*
Nucleotide sequence: 1029 bp
>T6CP002883 NC_010717:c1620263-1619235 [Xanthomonas oryzae pv. oryzae PXO99A] [TssA]
ATGCAGATCGACAACGCACCGTTGCTGCGACCGGTCGACGAACAGGTGCCATCCGGTCCGAACCTGGAATACACCCCGGA
GTTCCAGAGCCTGGAGGAACTTGCACGACCGCGTCAGGAGCGCGCCTTGGGCGCTGGCGTGCTTGTGCCCGACGCGCCGC
AATGGCGCCAGGTCGCCGAGAGCGCCGAACACTTGCTAGGGCGCTCCAAGGACTTGCGGCTGGGCATCTTGCTGAGCATC
GCCCGCTTGCACCAGGACGGTCTGGTGGGCTGGTCCAGCGGCGTCGGCCTGCTCCGACAACTGCTGGAGCAGTTCTGGGG
CGACGTCCATCCTCATCTGGATGCCGATGAAGACAACGACCCGACCGAACGCGTCAACGCCATCGCTGCGTTGGCCGACA
GCGAGCGCACGCTGACACAGCTGCGCAACGTGCGCCTATTCAAGGGACTGCATCCAGGACATTTCTCGCTGCGCGATCTG
CGCATCGTGCAAGGCACGCTCAAGCTCGCTGCGGAGGACGCGAGCGAGATACCAGAGCCTGCCGCCATCGATGCCTGCCT
GCGCGACTGCCCGCTGGAGGCGTTGCTTGATCTGGACGCGGCCCTGGCCGCTGCGCAGGACGACATTGCCGCAATTGCCG
GCGTGTTCGCCGAGCGCACTCCGGGGCACGGTCCGGAGCTGGCACCGCTCACGCAGGATCTGGACGAGTTGCGTGCGTTC
CTGCGGCCCTATGTGTCCGAACGTTCCGGATCCCCGGCCGAGCCGACCGAACATGCAGCACCGGGCGCCGACACTGTCAG
GACATCGACGCCACGCGCGCACGCCGTGGAGCATCCGGACGAGGTTCGCCGCATGCTCGACCAGCTCTGCGATTACTACG
CGCGGCGCGAGCCCTCCAGCCCGGTGCCGTTACTGTTGCGGCGCGCACAACGCCTGGTCGGCCTGGATTTCACCGCACTG
ATACGCGATCTCGCGCCGCGCGCGATTGAAGAGCTGCAAGTGGTGTCGGGCCAGGACCATTCCGACTAG
ATGCAGATCGACAACGCACCGTTGCTGCGACCGGTCGACGAACAGGTGCCATCCGGTCCGAACCTGGAATACACCCCGGA
GTTCCAGAGCCTGGAGGAACTTGCACGACCGCGTCAGGAGCGCGCCTTGGGCGCTGGCGTGCTTGTGCCCGACGCGCCGC
AATGGCGCCAGGTCGCCGAGAGCGCCGAACACTTGCTAGGGCGCTCCAAGGACTTGCGGCTGGGCATCTTGCTGAGCATC
GCCCGCTTGCACCAGGACGGTCTGGTGGGCTGGTCCAGCGGCGTCGGCCTGCTCCGACAACTGCTGGAGCAGTTCTGGGG
CGACGTCCATCCTCATCTGGATGCCGATGAAGACAACGACCCGACCGAACGCGTCAACGCCATCGCTGCGTTGGCCGACA
GCGAGCGCACGCTGACACAGCTGCGCAACGTGCGCCTATTCAAGGGACTGCATCCAGGACATTTCTCGCTGCGCGATCTG
CGCATCGTGCAAGGCACGCTCAAGCTCGCTGCGGAGGACGCGAGCGAGATACCAGAGCCTGCCGCCATCGATGCCTGCCT
GCGCGACTGCCCGCTGGAGGCGTTGCTTGATCTGGACGCGGCCCTGGCCGCTGCGCAGGACGACATTGCCGCAATTGCCG
GCGTGTTCGCCGAGCGCACTCCGGGGCACGGTCCGGAGCTGGCACCGCTCACGCAGGATCTGGACGAGTTGCGTGCGTTC
CTGCGGCCCTATGTGTCCGAACGTTCCGGATCCCCGGCCGAGCCGACCGAACATGCAGCACCGGGCGCCGACACTGTCAG
GACATCGACGCCACGCGCGCACGCCGTGGAGCATCCGGACGAGGTTCGCCGCATGCTCGACCAGCTCTGCGATTACTACG
CGCGGCGCGAGCCCTCCAGCCCGGTGCCGTTACTGTTGCGGCGCGCACAACGCCTGGTCGGCCTGGATTTCACCGCACTG
ATACGCGATCTCGCGCCGCGCGCGATTGAAGAGCTGCAAGTGGTGTCGGGCCAGGACCATTCCGACTAG