Detailed information of component protein


Summary

Component ID T6CP002882
Component protein type TssM
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (1153 a.a.); Nucleotide sequence (3459 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07405
Coordinate (Strand) 1611018..1614476 (+)
NCBI ID WP_012444500.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.8e-88 200..456
IcmF-related PF06761.14 2.2e-57 511..808
IcmF_C PF06744.14 2e-16 1034..1134
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MRFVLD
Transmembrane helix 7-29 FLRVRYLASAAILSLLALLVWVG
Outside 30-43 GPYLSLGRWQPFAS
Transmembrane helix 44-66 VSGRLLAMAVLVLAWAGWRYLRW
Inside 67-450 RRDSAKQQRLAAELVGQGARAEDASGNDSRARAAHEQVRLRARFTEAMAVLRRRRRNGPGLHVLPWYLLIGAPGSGKSTLLQSSGLEFPLKAHGTHAALEGVGGTRNCDWWFADQAVFLDSAGRYTTQDSDAIADAGAWHGFLDLLRRHRRQPLNGVIVTVSVAELLELDGDAGLSHARAVRHRLNELVEKLRARVPVYLIVTKCDLVSGFAEFFADLDAAGRAQVWGVSFPQAQAAGDTDPLTRFPTELERLLERIDQRVLERLHRARDARERAAVLSFPQQLRLLQPALMDVVQTAFGRHGYAGQPWLRGVYLSSGTQQGHPIDHVISAVAQHFGVAAAGLPPVSSAPRSYFLSRLLKDVVFAEAGLAGSQPGSAQRRRLLQ
Transmembrane helix 451-473 LACWAVLTATTLGVLSGMAGSYA
Outside 474-1152 RNVRLIGQVRDALDAYPAGPLPADAGEAAFYAKALQRFDALAQARDAALPPGASIPWSRRFGLHQGTALARDVQEAYLRDLNGALLPALAQSLRRKLEQSSNDPQRLYPLLKGYLMLGDPTRRDAMHLATLAGTVWRQIFPDDASVRAGLNLHLRALLGPVDGARALALDRQQIEQTRASLRTAELPALVYGGLKLTQPGVDAGQAPRLDRRLGLLSDVFERRSGLPLSAPLPPLFTRQAFQAQIGGGIAHGVQQFLADDWVLGTAPLDPLARSQLEREVLALYQRDYIAAWDSLLADLVLRPVVQTGQASAVAAKLGGPASPLKALLVLLREHTHALGRTPAAKAGAGAAAAADTAAAAEPDVAAEPIERHFEPLTRLLDGGPGASALDETLAALTQMSRTLLGAAAGVAADQNAPALLIAAQQAEQLPPPLGNWMATLSGRGRALTASSAGEALRNAQRQAAGRECALLVSGRFPFVPGSNNEIPLRDFAELFAPGGRMDRFAQQALLGKVDTSGPGWKWNAGMAAAGADDVLARAQLADEIKQAFFAGGGAQPQVAFTVSIPPQAGIRRLQLEVDGQALDVRDGARATQSMTWPGPTPGLVRLAAWDASGQALPVVEYRGPWAWFRVMQAGRLHRSGDLDYTASLALGGTSVRVDIQPASLRHPFAASAVQRFSCP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -


  Protein sequence: 1153 a.a.    

>T6CP002882 NC_010717:1611018-1614476 [Xanthomonas oryzae pv. oryzae PXO99A] [TssM]
MRFVLDFLRVRYLASAAILSLLALLVWVGGPYLSLGRWQPFASVSGRLLAMAVLVLAWAGWRYLRWRRDSAKQQRLAAEL
VGQGARAEDASGNDSRARAAHEQVRLRARFTEAMAVLRRRRRNGPGLHVLPWYLLIGAPGSGKSTLLQSSGLEFPLKAHG
THAALEGVGGTRNCDWWFADQAVFLDSAGRYTTQDSDAIADAGAWHGFLDLLRRHRRQPLNGVIVTVSVAELLELDGDAG
LSHARAVRHRLNELVEKLRARVPVYLIVTKCDLVSGFAEFFADLDAAGRAQVWGVSFPQAQAAGDTDPLTRFPTELERLL
ERIDQRVLERLHRARDARERAAVLSFPQQLRLLQPALMDVVQTAFGRHGYAGQPWLRGVYLSSGTQQGHPIDHVISAVAQ
HFGVAAAGLPPVSSAPRSYFLSRLLKDVVFAEAGLAGSQPGSAQRRRLLQLACWAVLTATTLGVLSGMAGSYARNVRLIG
QVRDALDAYPAGPLPADAGEAAFYAKALQRFDALAQARDAALPPGASIPWSRRFGLHQGTALARDVQEAYLRDLNGALLP
ALAQSLRRKLEQSSNDPQRLYPLLKGYLMLGDPTRRDAMHLATLAGTVWRQIFPDDASVRAGLNLHLRALLGPVDGARAL
ALDRQQIEQTRASLRTAELPALVYGGLKLTQPGVDAGQAPRLDRRLGLLSDVFERRSGLPLSAPLPPLFTRQAFQAQIGG
GIAHGVQQFLADDWVLGTAPLDPLARSQLEREVLALYQRDYIAAWDSLLADLVLRPVVQTGQASAVAAKLGGPASPLKAL
LVLLREHTHALGRTPAAKAGAGAAAAADTAAAAEPDVAAEPIERHFEPLTRLLDGGPGASALDETLAALTQMSRTLLGAA
AGVAADQNAPALLIAAQQAEQLPPPLGNWMATLSGRGRALTASSAGEALRNAQRQAAGRECALLVSGRFPFVPGSNNEIP
LRDFAELFAPGGRMDRFAQQALLGKVDTSGPGWKWNAGMAAAGADDVLARAQLADEIKQAFFAGGGAQPQVAFTVSIPPQ
AGIRRLQLEVDGQALDVRDGARATQSMTWPGPTPGLVRLAAWDASGQALPVVEYRGPWAWFRVMQAGRLHRSGDLDYTAS
LALGGTSVRVDIQPASLRHPFAASAVQRFSCP*

  Nucleotide sequence: 3459 bp    

>T6CP002882 NC_010717:1611018-1614476 [Xanthomonas oryzae pv. oryzae PXO99A] [TssM]
ATGCGCTTTGTGCTCGATTTCCTGCGCGTGCGCTACCTCGCCAGCGCTGCCATCCTCAGTCTGTTGGCCCTCCTGGTGTG
GGTCGGCGGACCCTATCTCAGCCTGGGCCGCTGGCAGCCGTTTGCCAGCGTGAGCGGGCGCCTGCTTGCCATGGCCGTGC
TGGTGCTCGCGTGGGCAGGGTGGCGCTATCTGCGCTGGCGCCGCGACAGCGCCAAGCAGCAACGTCTGGCCGCCGAACTG
GTCGGGCAGGGAGCACGTGCCGAAGACGCCAGCGGCAACGACAGTCGCGCGCGTGCAGCACACGAGCAGGTCCGCCTGCG
TGCGCGCTTTACCGAAGCCATGGCGGTGCTGCGCCGTCGCCGTCGCAACGGTCCCGGCCTGCACGTGCTGCCCTGGTATC
TGCTGATCGGCGCGCCCGGTTCCGGCAAGAGCACCTTGCTGCAGTCTTCGGGCCTGGAGTTCCCCCTCAAGGCACATGGC
ACCCACGCCGCGCTGGAAGGTGTCGGTGGCACGCGCAACTGCGATTGGTGGTTCGCCGACCAAGCAGTGTTCCTCGACAG
TGCCGGGCGCTATACCACCCAGGATTCGGACGCCATCGCCGATGCCGGTGCCTGGCATGGCTTTCTGGACCTGCTGCGGC
GGCATCGCCGGCAGCCATTGAACGGCGTCATCGTGACCGTGAGCGTGGCCGAGCTGCTGGAGCTCGATGGCGATGCCGGT
CTGTCGCACGCGCGGGCAGTACGTCATCGACTGAACGAACTGGTCGAGAAACTGCGCGCACGCGTGCCGGTCTACCTGAT
CGTGACCAAATGCGATCTGGTGTCGGGCTTCGCCGAATTCTTCGCCGATCTGGATGCCGCCGGCCGCGCGCAGGTGTGGG
GGGTGTCGTTCCCACAGGCGCAGGCCGCCGGTGACACCGATCCGTTGACGCGATTCCCCACCGAGCTCGAACGCCTGCTG
GAGCGGATCGATCAGCGCGTGCTGGAGCGCCTGCATCGGGCGCGCGATGCACGCGAGCGTGCCGCGGTGCTGTCCTTTCC
GCAGCAATTGCGGTTGCTTCAGCCAGCGCTGATGGACGTCGTGCAGACCGCGTTCGGCCGCCATGGCTATGCCGGCCAGC
CGTGGCTGCGTGGTGTCTATCTGAGCTCGGGGACGCAGCAAGGCCATCCGATCGACCACGTCATCTCGGCAGTGGCGCAA
CACTTCGGTGTTGCCGCCGCCGGTCTGCCGCCCGTCAGCAGCGCACCACGCAGTTACTTCCTGTCACGCCTGCTCAAGGA
CGTGGTCTTCGCCGAGGCGGGACTGGCCGGCAGCCAACCCGGCAGCGCGCAGCGCCGTCGGTTGCTGCAGCTGGCCTGCT
GGGCCGTGTTGACCGCCACCACCCTGGGCGTGCTGTCGGGCATGGCCGGCAGTTACGCCCGCAACGTGCGGCTGATCGGG
CAGGTGCGCGACGCGCTCGATGCCTATCCCGCCGGCCCGCTGCCCGCCGATGCAGGCGAGGCGGCCTTCTATGCAAAAGC
CTTGCAGCGTTTCGACGCATTGGCGCAGGCGCGCGATGCGGCGCTGCCGCCGGGCGCGTCGATTCCGTGGTCGCGACGTT
TCGGGCTGCACCAGGGCACGGCCTTGGCGCGCGATGTGCAAGAAGCGTATCTGCGCGACCTCAATGGCGCGTTGCTGCCG
GCATTGGCGCAATCGCTGCGACGCAAGCTGGAGCAGTCCAGCAACGATCCGCAACGTCTGTATCCATTGTTGAAGGGCTA
TCTGATGCTGGGAGACCCGACACGGCGCGATGCAATGCATCTGGCCACGCTGGCAGGCACGGTCTGGCGCCAGATATTTC
CCGACGATGCATCGGTGCGTGCGGGGTTGAACCTGCATCTGCGCGCCTTGCTGGGTCCGGTGGACGGCGCGCGCGCGCTT
GCGCTGGATCGGCAGCAGATCGAGCAGACACGGGCGAGCCTGCGAACCGCCGAACTGCCGGCACTGGTCTACGGTGGCCT
CAAGCTGACGCAGCCCGGGGTCGATGCCGGCCAGGCCCCACGCCTGGATCGCCGCCTGGGCCTGCTGAGTGATGTCTTCG
AACGCCGCAGTGGCCTGCCGTTGTCTGCGCCATTGCCCCCGCTGTTCACCCGTCAAGCGTTTCAAGCACAGATCGGCGGT
GGCATCGCGCATGGCGTGCAGCAGTTTCTCGCCGACGATTGGGTGTTGGGCACGGCACCGCTGGACCCGTTGGCGCGCTC
GCAACTGGAGCGCGAGGTATTGGCGCTGTATCAGCGCGACTACATCGCCGCCTGGGACAGCCTGCTGGCCGATCTGGTGT
TGCGGCCGGTCGTGCAGACCGGGCAGGCGAGTGCGGTGGCCGCCAAGCTGGGTGGACCGGCATCGCCGCTGAAGGCGTTG
CTGGTGTTGCTGCGCGAGCACACCCACGCACTGGGGCGCACGCCTGCAGCGAAGGCCGGCGCGGGCGCTGCAGCTGCCGC
GGACACTGCTGCTGCGGCCGAGCCGGATGTGGCAGCCGAACCGATCGAACGCCATTTCGAACCGCTCACTCGCCTGCTCG
ATGGTGGGCCGGGCGCCAGTGCGCTGGACGAAACCCTGGCCGCGCTGACCCAGATGAGCCGCACGCTGTTGGGAGCCGCC
GCTGGCGTGGCTGCCGACCAGAACGCCCCGGCCTTGCTGATCGCCGCGCAACAGGCCGAACAGCTGCCGCCGCCGCTGGG
CAACTGGATGGCGACCTTGTCCGGTCGTGGTCGCGCATTGACCGCCAGCAGCGCCGGCGAAGCATTGCGTAACGCGCAAC
GGCAAGCCGCCGGGCGTGAGTGCGCGCTGCTGGTGAGCGGGCGTTTCCCGTTCGTGCCGGGCAGCAACAACGAGATCCCG
CTGCGCGATTTCGCCGAACTGTTCGCACCCGGTGGGCGGATGGACCGGTTCGCGCAACAGGCGTTGCTCGGCAAGGTCGA
TACCAGCGGGCCTGGCTGGAAATGGAATGCAGGCATGGCTGCGGCTGGCGCAGACGACGTGCTGGCGCGCGCGCAACTGG
CCGACGAGATCAAGCAAGCATTCTTCGCCGGCGGCGGTGCGCAGCCGCAGGTCGCCTTTACTGTTTCCATTCCACCGCAA
GCAGGGATTCGCCGGCTGCAGCTGGAGGTGGATGGGCAAGCGCTGGACGTGCGCGATGGTGCGCGCGCCACCCAGTCGAT
GACCTGGCCTGGTCCAACGCCAGGTCTGGTGCGTCTGGCGGCGTGGGACGCCAGCGGACAGGCTTTGCCAGTGGTCGAAT
ACCGCGGCCCCTGGGCCTGGTTTCGGGTCATGCAGGCCGGGCGGCTGCACCGCAGCGGCGATCTGGATTACACCGCCAGC
CTCGCGCTGGGCGGCACCAGCGTGCGCGTGGACATACAACCGGCCAGCCTGCGGCATCCCTTTGCGGCGTCGGCCGTGCA
GCGGTTCAGTTGCCCATGA