Detailed information of component protein
Summary
| Component ID | T6CP002882 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00286  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (1153 a.a.); Nucleotide sequence (3459 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 1611018..1614476 (+) |
| NCBI ID | WP_012444500.1 |
| RefSeq | NC_010717 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-6 | MRFVLD |
| Transmembrane helix | 7-29 | FLRVRYLASAAILSLLALLVWVG |
| Outside | 30-43 | GPYLSLGRWQPFAS |
| Transmembrane helix | 44-66 | VSGRLLAMAVLVLAWAGWRYLRW |
| Inside | 67-450 | RRDSAKQQRLAAELVGQGARAEDASGNDSRARAAHEQVRLRARFTEAMAVLRRRRRNGPGLHVLPWYLLIGAPGSGKSTLLQSSGLEFPLKAHGTHAALEGVGGTRNCDWWFADQAVFLDSAGRYTTQDSDAIADAGAWHGFLDLLRRHRRQPLNGVIVTVSVAELLELDGDAGLSHARAVRHRLNELVEKLRARVPVYLIVTKCDLVSGFAEFFADLDAAGRAQVWGVSFPQAQAAGDTDPLTRFPTELERLLERIDQRVLERLHRARDARERAAVLSFPQQLRLLQPALMDVVQTAFGRHGYAGQPWLRGVYLSSGTQQGHPIDHVISAVAQHFGVAAAGLPPVSSAPRSYFLSRLLKDVVFAEAGLAGSQPGSAQRRRLLQ |
| Transmembrane helix | 451-473 | LACWAVLTATTLGVLSGMAGSYA |
| Outside | 474-1152 | RNVRLIGQVRDALDAYPAGPLPADAGEAAFYAKALQRFDALAQARDAALPPGASIPWSRRFGLHQGTALARDVQEAYLRDLNGALLPALAQSLRRKLEQSSNDPQRLYPLLKGYLMLGDPTRRDAMHLATLAGTVWRQIFPDDASVRAGLNLHLRALLGPVDGARALALDRQQIEQTRASLRTAELPALVYGGLKLTQPGVDAGQAPRLDRRLGLLSDVFERRSGLPLSAPLPPLFTRQAFQAQIGGGIAHGVQQFLADDWVLGTAPLDPLARSQLEREVLALYQRDYIAAWDSLLADLVLRPVVQTGQASAVAAKLGGPASPLKALLVLLREHTHALGRTPAAKAGAGAAAAADTAAAAEPDVAAEPIERHFEPLTRLLDGGPGASALDETLAALTQMSRTLLGAAAGVAADQNAPALLIAAQQAEQLPPPLGNWMATLSGRGRALTASSAGEALRNAQRQAAGRECALLVSGRFPFVPGSNNEIPLRDFAELFAPGGRMDRFAQQALLGKVDTSGPGWKWNAGMAAAGADDVLARAQLADEIKQAFFAGGGAQPQVAFTVSIPPQAGIRRLQLEVDGQALDVRDGARATQSMTWPGPTPGLVRLAAWDASGQALPVVEYRGPWAWFRVMQAGRLHRSGDLDYTASLALGGTSVRVDIQPASLRHPFAASAVQRFSCP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9911 | - | - |
Protein sequence: 1153 a.a.
Nucleotide sequence: 3459 bp