Detailed information of component protein
Summary
| Component ID | T6CP012762 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS00286  (Type i3) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (278 a.a.); Nucleotide sequence (834 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PXO_RS07335 |
| Coordinate (Strand) | 1595194..1596027 (+) |
| NCBI ID | WP_011259604.1 |
| RefSeq | NC_010717 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 1.3e-36 | 145..264 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-277 | MSAVHPEHACARLLKAGDPAQSLATAKDWVRQCPADAQARIGLFQLLAVAGEWQRAQQQLRLAAELDQGWGGVVAAYVRILDAELEREQVLAGRMMPLMPGQVPPWQQDLLQALQHDRDGEPGQAARRRALALTQADAIAGHIDGRRFDWLADADPRFGPCLEVILEVGYAWVPFVQLRSLCLEAPTTLRDLLWQSVDIQWHDGTRSRGVVPCRYPGSQHSEQGAIRLGQRTEWKGEALSACGLGQRLLAGSEDDYPVLDIRHIAFDTAAVEAPWPN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9828 | - | - |
Protein sequence: 278 a.a.
>T6CP012762 NC_010717:1595194-1596027 [Xanthomonas oryzae pv. oryzae PXO99A] [TagJ]
MSAVHPEHACARLLKAGDPAQSLATAKDWVRQCPADAQARIGLFQLLAVAGEWQRAQQQLRLAAELDQGWGGVVAAYVRI
LDAELEREQVLAGRMMPLMPGQVPPWQQDLLQALQHDRDGEPGQAARRRALALTQADAIAGHIDGRRFDWLADADPRFGP
CLEVILEVGYAWVPFVQLRSLCLEAPTTLRDLLWQSVDIQWHDGTRSRGVVPCRYPGSQHSEQGAIRLGQRTEWKGEALS
ACGLGQRLLAGSEDDYPVLDIRHIAFDTAAVEAPWPN*
MSAVHPEHACARLLKAGDPAQSLATAKDWVRQCPADAQARIGLFQLLAVAGEWQRAQQQLRLAAELDQGWGGVVAAYVRI
LDAELEREQVLAGRMMPLMPGQVPPWQQDLLQALQHDRDGEPGQAARRRALALTQADAIAGHIDGRRFDWLADADPRFGP
CLEVILEVGYAWVPFVQLRSLCLEAPTTLRDLLWQSVDIQWHDGTRSRGVVPCRYPGSQHSEQGAIRLGQRTEWKGEALS
ACGLGQRLLAGSEDDYPVLDIRHIAFDTAAVEAPWPN*
Nucleotide sequence: 834 bp
>T6CP012762 NC_010717:1595194-1596027 [Xanthomonas oryzae pv. oryzae PXO99A] [TagJ]
ATGTCTGCTGTCCATCCCGAACATGCCTGCGCCCGCCTGCTCAAGGCGGGCGACCCGGCGCAATCGTTGGCCACCGCCAA
GGACTGGGTGCGGCAGTGCCCGGCCGATGCCCAAGCGCGCATCGGGCTGTTCCAACTGTTGGCGGTGGCCGGAGAGTGGC
AGCGCGCGCAACAACAATTGCGCCTGGCCGCGGAGTTGGACCAGGGTTGGGGCGGGGTCGTGGCTGCGTATGTGCGCATC
CTCGACGCTGAACTGGAACGCGAACAGGTGCTGGCCGGCCGAATGATGCCGCTGATGCCTGGTCAGGTCCCGCCGTGGCA
GCAGGATCTGCTGCAGGCATTGCAGCATGATCGCGACGGCGAACCAGGGCAGGCAGCGCGACGGCGTGCCCTGGCGCTTA
CGCAAGCCGATGCCATCGCTGGCCATATCGATGGCCGGCGTTTCGACTGGCTGGCCGACGCCGACCCGCGTTTTGGTCCG
TGCCTTGAGGTCATCCTCGAAGTGGGCTACGCGTGGGTGCCGTTCGTCCAATTGCGCAGCCTGTGCTTGGAAGCCCCGAC
CACGCTGCGCGACTTGCTATGGCAGTCGGTCGACATCCAATGGCATGACGGCACACGCAGCCGTGGCGTGGTGCCGTGCC
GTTACCCCGGTAGCCAACACAGCGAGCAGGGCGCGATCCGCCTTGGCCAGCGCACCGAATGGAAGGGCGAGGCGTTGTCC
GCATGCGGTCTGGGGCAACGCTTGCTGGCTGGCAGCGAGGACGACTACCCGGTGCTCGACATCCGCCACATCGCATTCGA
CACCGCCGCGGTGGAAGCGCCATGGCCGAACTGA
ATGTCTGCTGTCCATCCCGAACATGCCTGCGCCCGCCTGCTCAAGGCGGGCGACCCGGCGCAATCGTTGGCCACCGCCAA
GGACTGGGTGCGGCAGTGCCCGGCCGATGCCCAAGCGCGCATCGGGCTGTTCCAACTGTTGGCGGTGGCCGGAGAGTGGC
AGCGCGCGCAACAACAATTGCGCCTGGCCGCGGAGTTGGACCAGGGTTGGGGCGGGGTCGTGGCTGCGTATGTGCGCATC
CTCGACGCTGAACTGGAACGCGAACAGGTGCTGGCCGGCCGAATGATGCCGCTGATGCCTGGTCAGGTCCCGCCGTGGCA
GCAGGATCTGCTGCAGGCATTGCAGCATGATCGCGACGGCGAACCAGGGCAGGCAGCGCGACGGCGTGCCCTGGCGCTTA
CGCAAGCCGATGCCATCGCTGGCCATATCGATGGCCGGCGTTTCGACTGGCTGGCCGACGCCGACCCGCGTTTTGGTCCG
TGCCTTGAGGTCATCCTCGAAGTGGGCTACGCGTGGGTGCCGTTCGTCCAATTGCGCAGCCTGTGCTTGGAAGCCCCGAC
CACGCTGCGCGACTTGCTATGGCAGTCGGTCGACATCCAATGGCATGACGGCACACGCAGCCGTGGCGTGGTGCCGTGCC
GTTACCCCGGTAGCCAACACAGCGAGCAGGGCGCGATCCGCCTTGGCCAGCGCACCGAATGGAAGGGCGAGGCGTTGTCC
GCATGCGGTCTGGGGCAACGCTTGCTGGCTGGCAGCGAGGACGACTACCCGGTGCTCGACATCCGCCACATCGCATTCGA
CACCGCCGCGGTGGAAGCGCCATGGCCGAACTGA