Detailed information of component protein


Summary

Component ID T6CP002878
Component protein type TssH
T6SS ID (Type) T6SS00286 insolico (Type i3)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (902 a.a.); Nucleotide sequence (2706 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS07355
Coordinate (Strand) 1599406..1602111 (+)
NCBI ID WP_012444496.1
RefSeq NC_010717
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.4e-39 633..799
AAA_lid_9 PF17871.3 1.1e-28 365..455
ClpB_D2-small PF10431.11 1.6e-12 806..882
AAA PF00004.31 2.1e-08 225..336
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-901 MADISRAALFGKLNKTTYRGIESATAFCRLRGDHEVELLHWLHQLLQAQDGDLHRIVRRFSLDASRLAQDLTVALDRLPRGGGGHFDLSASVEEAVERAWVHCTLRYGRQRIRGGDLLVAILHARSLRHGLLAMSSEFAKLRAEALADDLDDIVAGSPEDDATDVAAAVAPVGTGATGGTAALALYTVDLTAQAREGKLDPIIGRDEEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEGFAQRIARGDVPPALQDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLVGAGGAAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDEAKAVRMMRGVASTMEQHHRVQILDEALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLDTEHAIIERERAIGIVVDERAAACASLLQSEHGRLRELEQRWVAEKALVDALLSLRAQLRGGNAPVEGTGSALETEAEQRASGDIAVLETPVHVDRDALLARLQLVQAELAALQGESPLILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLPELLAKRVIGQDHAMEMIAKRIQTSRAGLDNPDKPIGVFLLAGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRKPYAVVLLDEVEKAHPDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPELMPDPDGMAKALREPLLKVFPPALLGRLVAIPYYPLSNAMLGQIVRLQLNRIKQRIEERYRIPFDYDESVVELVVSRCTESESGGRMIDAILTNSMLPEISRKFLRGVVDRKRTERLDIRVEDSALVYSFL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 902 a.a.    

>T6CP002878 NC_010717:1599406-1602111 [Xanthomonas oryzae pv. oryzae PXO99A] [TssH]
MADISRAALFGKLNKTTYRGIESATAFCRLRGDHEVELLHWLHQLLQAQDGDLHRIVRRFSLDASRLAQDLTVALDRLPR
GGGGHFDLSASVEEAVERAWVHCTLRYGRQRIRGGDLLVAILHARSLRHGLLAMSSEFAKLRAEALADDLDDIVAGSPED
DATDVAAAVAPVGTGATGGTAALALYTVDLTAQAREGKLDPIIGRDEEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEG
FAQRIARGDVPPALQDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLVGAGGAAGTGDAANL
LKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDEAKAVRMMRGVASTMEQHHRVQILDEALEAAVKLSH
RYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLDTEHAIIERERAIGIVVDERAAACASLLQSEHGRLR
ELEQRWVAEKALVDALLSLRAQLRGGNAPVEGTGSALETEAEQRASGDIAVLETPVHVDRDALLARLQLVQAELAALQGE
SPLILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLPELLAKRVIGQDHAMEMIAKRIQTSRAGLDNPDKPIGVFLL
AGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRKPYAVVLLDEVEKAH
PDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPELMPDPDGMAKALREPLLKVFPPALLGRLVA
IPYYPLSNAMLGQIVRLQLNRIKQRIEERYRIPFDYDESVVELVVSRCTESESGGRMIDAILTNSMLPEISRKFLRGVVD
RKRTERLDIRVEDSALVYSFL*

  Nucleotide sequence: 2706 bp    

>T6CP002878 NC_010717:1599406-1602111 [Xanthomonas oryzae pv. oryzae PXO99A] [TssH]
ATGGCAGACATCAGTCGCGCCGCCTTGTTCGGCAAGCTCAACAAGACCACCTATCGCGGTATCGAATCGGCCACTGCGTT
CTGCAGGCTACGTGGCGACCACGAAGTGGAACTGCTGCACTGGCTGCATCAGTTGCTGCAGGCGCAAGACGGCGACTTGC
ACCGCATCGTGCGCCGTTTTTCGCTGGATGCGTCGCGGCTTGCACAGGACCTGACCGTGGCGCTCGATCGCCTGCCGCGC
GGCGGTGGCGGACACTTCGATCTGTCGGCCAGCGTGGAGGAGGCAGTGGAACGCGCCTGGGTGCACTGCACGTTGCGTTA
CGGGCGGCAACGCATCCGTGGCGGCGATCTGCTGGTAGCGATCCTGCACGCGCGTAGCCTGCGTCACGGGTTGCTGGCGA
TGTCGAGCGAGTTCGCCAAGCTGCGCGCGGAAGCACTGGCGGACGATCTGGATGACATCGTCGCCGGCTCGCCGGAAGAC
GATGCCACCGACGTTGCGGCGGCTGTCGCCCCCGTTGGGACTGGCGCAACAGGTGGTACTGCGGCGCTCGCGCTGTACAC
GGTCGACCTCACCGCACAAGCGCGCGAGGGCAAGCTGGACCCGATCATCGGCCGCGACGAGGAGATTCGCCAGGTCGTCG
ATATCCTGATGCGGCGCCGCCAGAACAACCCGATCCTGGTTGGCGAGGCCGGCGTCGGCAAGACCGCGGTGGTGGAAGGC
TTCGCACAACGTATCGCGCGCGGCGATGTGCCGCCCGCGTTGCAGGATGTGCAGCTGCGCACGCTCGATGTCGGCTTGCT
GCAAGCCGGCGCCAGCATGAAAGGTGAGTTCGAGCAGCGCTTGCGCGCAGTCATCGACGAAGTGCAGGCCAGCCCCAAGC
CGATCATTCTGTTCGTGGATGAAACCCATACCCTGGTCGGCGCCGGTGGCGCGGCCGGCACCGGCGATGCGGCCAACCTG
CTCAAGCCGGCACTGGCGCGCGGCACCTTGCGCACCGTAGGCGCGACCACCTTTGCCGAGTACAAAAAGTACATCGAAAA
AGACCCTGCATTGACGCGGCGCTTCCAGGCCGTGCAGGTCGACGAGCCGGACGAGGCCAAGGCCGTGCGGATGATGCGCG
GTGTCGCCTCGACGATGGAACAGCACCACCGCGTGCAGATCCTTGACGAAGCGCTGGAAGCGGCGGTCAAGCTCAGTCAC
CGCTACATCCCGGCGCGCCAGCTGCCAGACAAATCGGTCAGTCTGCTCGATACCGCCTGCGCGCGCGTCGCGGTGAGCCT
GCATGCCACGCCTGCGGAAGTGGACGACAGCCGTCGCCGCATCGAATCGCTGGACACCGAGCACGCCATCATCGAGCGCG
AGCGTGCGATTGGCATCGTGGTCGATGAGCGTGCTGCCGCTTGCGCCAGCCTGCTGCAAAGCGAGCACGGCCGCCTGCGC
GAGCTGGAACAGCGCTGGGTTGCCGAAAAGGCGTTGGTCGATGCGCTGTTGTCGCTACGCGCGCAACTGCGAGGCGGCAA
CGCGCCGGTGGAAGGGACCGGCAGTGCGTTGGAAACGGAGGCCGAACAGCGTGCGTCTGGCGATATCGCGGTGCTCGAAA
CGCCGGTACACGTGGATCGCGATGCGCTCTTAGCACGTTTGCAGTTGGTACAGGCCGAACTGGCCGCATTGCAGGGCGAA
TCGCCGCTGATCCTGCCCACAGTCGATTACCAAGCCGTGGCCGCGGTGGTCGCCGACTGGACCGGCATCCCTGTCGGGCG
CATGGCCCGCAACGAGATCGACACCGTGCTGCGCTTGCCCGAACTGCTGGCCAAGCGCGTGATCGGCCAGGACCACGCCA
TGGAGATGATCGCCAAGCGGATCCAGACCAGCCGCGCCGGCCTGGACAACCCGGACAAACCGATCGGCGTGTTCCTGCTG
GCCGGAACCTCCGGCGTCGGCAAGACCGAAACCGCACTCGCCCTGGCCGAAACGCTGTACGGCGGCGAGCAAAACCTGAT
CACCATCAACATGAGCGAGTACCAAGAGGCGCACACTGTCTCCTCGCTCAAGGGCGCACCGCCGGGCTATGTGGGCTACG
GCGAAGGTGGCGTACTGACCGAAGCGGTGCGCCGCAAGCCGTACGCGGTCGTGCTGCTGGACGAAGTGGAAAAAGCCCAC
CCGGACGTGCACGAACTGTTCTTCCAGGTCTTCGACAAGGGCTGGATGGAAGACGGCGAAGGCCGCCGCATCGACTTCCG
CAACACCTTGATCATCCTTACCAGCAACGCCGGCACCGACCTGATCGCCAGCCTGTGCAAGGACCCGGAATTGATGCCGG
ATCCGGACGGCATGGCCAAGGCATTGCGCGAACCGTTGTTGAAGGTGTTTCCGCCGGCATTGCTCGGGCGGCTGGTGGCG
ATTCCGTATTACCCGCTCAGTAACGCCATGCTCGGACAGATCGTGCGATTGCAGTTGAACCGCATCAAGCAGCGGATCGA
AGAGCGCTACAGGATTCCGTTCGACTACGACGAGTCTGTAGTGGAGCTGGTGGTGAGCCGGTGTACCGAGAGCGAATCGG
GTGGCCGGATGATCGATGCGATTTTGACTAACTCGATGTTGCCGGAGATTAGCCGCAAATTTCTTCGTGGGGTAGTGGAC
CGGAAACGGACTGAACGCCTTGACATTCGTGTCGAAGATTCCGCATTGGTTTATTCGTTTCTCTGA