Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00112 insolico
T6SS type Type i3
Strain Burkholderia thailandensis E264
Replicon (RefSeq) chromosome II (NC_007650)
Location 303044..334482
Function -
Comment -
References
[1] Russell AB et al (2012) A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe. 11(5):538-49. [PudMed:22607806]
[2] Schwarz S et al (2010) Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PLoS Pathog. 6(8):e1001068. [PudMed:20865170]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentFHATssATssBTssCTssDTssETssFTssGTssHTssITssJTssKTssLTssM
Number11111111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
BTH_RS01280 299015..299911 - 897 WP_011400849.1 LysR family transcriptional regulator
BTH_RS01285 300115..300819 + 705 WP_009894996.1 SDR family oxidoreductase
BTH_RS01290 301071..303068 + 1998 WP_009894998.1 DUF3857 and transglutaminase domain-containing protein
T6CP011371 FHA BTH_RS01295 (tagH) 303044..304489 - 1446 WP_009895000.1 type VI secretion system-associated FHA domain protein TagH
BTH_RS01300 304544..304942 - 399 WP_009907141.1 TssQ family T6SS-associated lipoprotein
T6CP001049 TssJ BTH_RS01305 (tssJ) 305598..306116 + 519 WP_009895004.1 type VI secretion system lipoprotein TssJ
T6CP001050 TssK BTH_RS01310 (tssK) 306113..307519 + 1407 WP_009895006.1 type VI secretion system baseplate subunit TssK
T6CP001051 TssL BTH_RS01315 307535..308848 + 1314 WP_009895008.1 DotU family type VI secretion system protein
T6CP001052 TssM BTH_RS01320 (tssM) 308851..312480 + 3630 WP_009895010.1 type VI secretion system membrane subunit TssM
BTH_RS01325 (tagF) 312477..313352 + 876 WP_009895012.1 type VI secretion system-associated protein TagF
BTH_RS01330 313510..316143 + 2634 WP_009895014.1 protein kinase
T6CP001053 TssA BTH_RS01335 (tssA) 316196..317260 + 1065 WP_009895015.1 type VI secretion system protein TssA
T6CP001054 TssB BTH_RS01340 (tssB) 317322..317903 + 582 WP_009895017.1 type VI secretion system contractile sheath small subunit
T6CP001055 TssC BTH_RS01345 (tssC) 317896..319404 + 1509 WP_009895019.1 type VI secretion system contractile sheath large subunit
T6CP001056 TssD BTH_RS01350 319462..319953 + 492 WP_009895021.1 type VI secretion system tube protein Hcp
T6CP001057 TssE BTH_RS01355 (tssE) 319972..320532 + 561 WP_009895023.1 type VI secretion system baseplate subunit TssE
T6CP001058 TssF BTH_RS01360 (tssF) 320537..322408 + 1872 WP_009895028.1 type VI secretion system baseplate subunit TssF
T6CP001059 TssG BTH_RS01365 (tssG) 322372..323688 + 1317 WP_009895030.1 type VI secretion system baseplate subunit TssG
T6CP001060 TssH BTH_RS01370 (tssH) 323701..326358 + 2658 WP_009895032.1 type VI secretion system ATPase TssH
T6CP001061 TssI BTH_RS01375 (tssI) 326355..328559 + 2205 WP_009895034.1 type VI secretion system tip protein VgrG
BTH_RS01380 328575..329840 + 1266 WP_009895036.1 hypothetical protein
BTH_RS01385 329863..334482 + 4620 WP_009895037.1 RHS domain-containing protein
BTH_RS29390 334730..335177 - 448 pseudogene transposase
BTH_RS01400 335205..336473 - 1269 WP_011400855.1 IS256 family transposase
BTH_RS01405 336667..337332 - 666 WP_009895046.1 HAD-IA family hydrolase
BTH_RS01415 (nudK) 337540..338136 - 597 WP_004540486.1 GDP-mannose pyrophosphatase NudK
BTH_RS01420 338150..338484 - 335 pseudogene hypothetical protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector