Detailed information of component protein


Summary

Component ID T6CP001055
Component protein type TssC
T6SS ID (Type) T6SS00112 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (503 a.a.); Nucleotide sequence (1509 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS01345
Coordinate (Strand) 317896..319404 (+)
NCBI ID WP_009895019.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 9.7e-135 71..372
VipB_2 PF18945.2 1.4e-43 383..494
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-502 MNEHAQTRADTRAAAQPAVARDEFAALLQKEFKPKTAEARESVERAVRTLAQQALEHTAGMTTDAYGSVKQIIAEIDRKLSEQINLILHHQEFQTLEGAWRGLHYLVTNTETDELLKIKALPASRNELARTLKRYKGVAWDQSPLFRKVYEEEYGQFGGEPFGCLVGDFYFNHSPPDVEMLGELSKIAAAAHAPFIAGASPELMQMDSWQELANPRDLTKIFQNTEYAAWRSLRQSEDSRYVGLAMPRFLARLPYGARTNPVDEFDFEEDTDAASHDRYTWANSAYAMAANINRSFKLYGWCSSIRGVESGGAVEGLPCHTFPTDDGGVDQKCPTEIAISDRREAELAKNGFMPFVHRKNSDFAAFIGAQSLYQPAEYHDPDATANARLSGRLPYLFACCRFAHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAQVVVEEIDDNPGYYASKFFLRPHYQLEGLTVSLRLISKLPSAKAASE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9524 - -


  Protein sequence: 503 a.a.    

>T6CP001055 NC_007650:317896-319404 [Burkholderia thailandensis E264] [TssC]
MNEHAQTRADTRAAAQPAVARDEFAALLQKEFKPKTAEARESVERAVRTLAQQALEHTAGMTTDAYGSVKQIIAEIDRKL
SEQINLILHHQEFQTLEGAWRGLHYLVTNTETDELLKIKALPASRNELARTLKRYKGVAWDQSPLFRKVYEEEYGQFGGE
PFGCLVGDFYFNHSPPDVEMLGELSKIAAAAHAPFIAGASPELMQMDSWQELANPRDLTKIFQNTEYAAWRSLRQSEDSR
YVGLAMPRFLARLPYGARTNPVDEFDFEEDTDAASHDRYTWANSAYAMAANINRSFKLYGWCSSIRGVESGGAVEGLPCH
TFPTDDGGVDQKCPTEIAISDRREAELAKNGFMPFVHRKNSDFAAFIGAQSLYQPAEYHDPDATANARLSGRLPYLFACC
RFAHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAQVVVEEIDDNPGYYASKFFLRPHYQ
LEGLTVSLRLISKLPSAKAASE*

  Nucleotide sequence: 1509 bp    

>T6CP001055 NC_007650:317896-319404 [Burkholderia thailandensis E264] [TssC]
ATGAATGAACACGCTCAAACCCGGGCCGACACGCGCGCGGCCGCGCAGCCCGCCGTCGCGCGCGACGAGTTCGCCGCGCT
GCTGCAGAAGGAGTTCAAGCCGAAGACGGCGGAGGCGCGCGAATCGGTCGAGCGCGCGGTGCGCACGCTCGCGCAGCAGG
CGCTCGAGCACACGGCAGGCATGACGACCGACGCGTACGGCAGCGTGAAGCAGATCATCGCCGAGATCGACCGCAAGCTC
TCCGAGCAGATCAACCTGATCCTGCATCACCAGGAGTTCCAGACGCTCGAAGGCGCGTGGCGCGGGCTGCATTACCTCGT
CACGAACACCGAGACCGACGAGTTGCTGAAGATCAAGGCGCTGCCCGCGTCGCGCAACGAGCTCGCGCGCACGCTCAAGC
GCTACAAGGGCGTTGCATGGGATCAGAGCCCGCTGTTTCGCAAGGTCTACGAAGAGGAGTACGGCCAGTTCGGCGGCGAG
CCGTTCGGCTGCCTCGTCGGCGATTTTTACTTCAACCACAGCCCGCCCGACGTCGAGATGCTCGGCGAGCTGTCGAAGAT
CGCGGCCGCCGCGCACGCACCGTTCATCGCGGGCGCGTCGCCCGAGCTGATGCAGATGGATTCGTGGCAGGAACTGGCCA
ATCCGCGCGACCTCACGAAGATCTTCCAGAACACCGAATACGCGGCGTGGCGCAGCCTGCGCCAGTCCGAGGATTCGCGC
TACGTCGGGCTCGCGATGCCGCGCTTTCTCGCCCGGCTGCCGTATGGCGCGCGCACGAACCCCGTCGACGAATTCGACTT
CGAGGAAGACACCGACGCCGCGAGCCACGACCGCTATACGTGGGCGAATTCCGCGTACGCGATGGCGGCGAACATCAACC
GCTCGTTCAAGCTGTACGGCTGGTGCTCGTCGATCCGCGGCGTCGAATCGGGCGGCGCGGTCGAGGGGCTGCCGTGCCAC
ACGTTCCCGACCGACGACGGCGGCGTCGACCAGAAGTGCCCGACCGAGATCGCGATCAGCGACCGCCGCGAGGCCGAGCT
CGCGAAGAACGGATTCATGCCGTTCGTTCATCGAAAGAATTCGGATTTCGCGGCGTTCATCGGCGCGCAGTCGCTGTATC
AGCCCGCCGAGTATCACGATCCCGACGCGACCGCGAACGCGCGGCTCTCCGGCCGCCTGCCGTACCTGTTCGCATGCTGC
CGCTTCGCGCATTACCTGAAGTGCATCGTGCGCGACAAGATCGGCTCGTTTCGCGAGCGCGACGACATGGAGCGCTGGCT
CAACGACTGGATCATGAACTACGTCGACGGCGATCCGGCGAACTCGTCGCAGGAGACGAAGGCGCGCAAGCCGCTCGCGG
CCGCGCAGGTTGTCGTCGAGGAGATCGACGACAACCCCGGCTATTACGCGTCGAAATTCTTCCTGCGGCCGCATTACCAA
CTGGAAGGGCTCACCGTGTCGCTGCGGCTCATCTCGAAGCTGCCGTCGGCGAAGGCGGCGAGCGAATGA