Detailed information of component protein


Summary

Component ID T6CP001060
Component protein type TssH
T6SS ID (Type) T6SS00112 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (886 a.a.); Nucleotide sequence (2658 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS01370
Coordinate (Strand) 323701..326358 (+)
NCBI ID WP_009895032.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.5e-37 613..779
AAA_lid_9 PF17871.3 1.6e-28 369..456
ClpB_D2-small PF10431.11 2.9e-12 785..859
AAA PF00004.31 7.6e-09 227..328
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-885 MSDIGRVTLFGKLNAFLYETLEQATGFCRLRGNPYVELAHWLNQMLQRPDSDVHRVLRRFDIEAAAIDRGIVSALDRLPRGAGSVSDLSAHIDDAVERAWVYATLKYDATQIRGAVLLLAIVKTAQLRNVLYAIARDFERIVPDVFADELERIVEGSPEAPPPAARASAGAGGGASPAAREGSALARYAVDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKTAVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEATSSERPVILFVDEVHTLVGAGGAAGTGDAANLLKPALARGLLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALTMLRGLAAKLEAHHRVLVLDDALQAAVTLSHRYIPARQLPDKAISLLDTACARVAVSQHAVPAPIEDARRRIDSLRVERELIARECALGAGDAPRLDAIDASIASEQAALDALDARWQAERDALGQIVDWRASLLADDPSRALDETARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVSDWTGIPLGRMVRDEMQSVLKLADTLAERVVGQRHAVELIAERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAETLYGGEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRLSVVPYYPLTDEMLARIVALQLARIERRIESHHGIALRCEDSATALIVERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVYRFEEEGAT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9969 - -


  Protein sequence: 886 a.a.    

>T6CP001060 NC_007650:323701-326358 [Burkholderia thailandensis E264] [TssH]
MSDIGRVTLFGKLNAFLYETLEQATGFCRLRGNPYVELAHWLNQMLQRPDSDVHRVLRRFDIEAAAIDRGIVSALDRLPR
GAGSVSDLSAHIDDAVERAWVYATLKYDATQIRGAVLLLAIVKTAQLRNVLYAIARDFERIVPDVFADELERIVEGSPEA
PPPAARASAGAGGGASPAAREGSALARYAVDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKTAVA
EGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEATSSERPVILFVDEVHTLVGAGGAAGTGDAA
NLLKPALARGLLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALTMLRGLAAKLEAHHRVLVLDDALQAAVTL
SHRYIPARQLPDKAISLLDTACARVAVSQHAVPAPIEDARRRIDSLRVERELIARECALGAGDAPRLDAIDASIASEQAA
LDALDARWQAERDALGQIVDWRASLLADDPSRALDETARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVSDWT
GIPLGRMVRDEMQSVLKLADTLAERVVGQRHAVELIAERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAETLYG
GEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEG
RYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRLSVVPYYPLTDEMLARIVALQLAR
IERRIESHHGIALRCEDSATALIVERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVYRFE
EEGAT*

  Nucleotide sequence: 2658 bp    

>T6CP001060 NC_007650:323701-326358 [Burkholderia thailandensis E264] [TssH]
ATGTCCGATATCGGCCGAGTGACCTTGTTCGGAAAGCTGAACGCTTTTCTCTACGAGACATTGGAGCAGGCGACGGGCTT
CTGCCGGCTGCGCGGCAATCCGTACGTCGAGCTCGCGCACTGGCTGAACCAGATGCTCCAGCGCCCGGACAGCGACGTGC
ACCGGGTCCTGCGCCGCTTCGACATCGAAGCGGCCGCGATCGATCGCGGGATCGTCTCGGCGCTCGACCGGTTGCCGCGC
GGCGCGGGCTCCGTGTCCGATCTGTCCGCGCACATCGACGACGCGGTCGAGCGCGCGTGGGTCTACGCGACGCTCAAATA
CGACGCGACGCAGATCCGCGGCGCGGTGCTGCTGCTCGCGATCGTGAAGACGGCGCAACTGCGCAACGTGCTGTATGCGA
TCGCGCGCGACTTCGAGCGGATCGTGCCGGACGTGTTCGCCGACGAACTCGAGCGGATCGTCGAAGGCTCGCCGGAAGCG
CCGCCGCCGGCGGCGCGCGCATCGGCGGGCGCGGGGGGCGGCGCATCGCCCGCCGCGCGGGAAGGCTCGGCGCTCGCGCG
CTACGCGGTCGATCTGACCGCGCGGGCGCGCGCGGGTGAGATCGATCCGGTGGTGGGCCGCGACGGCGAGATTCGTCAGA
TCGTCGACATCCTGCTGCGCCGCCGGCAGAACAATCCGCTGCTCGTCGGCGAGGCGGGCGTCGGCAAGACCGCGGTCGCA
GAAGGCTTCGCGCTGCGCATCGTCGCGGGCGACGTGCCGCCGCCGCTGCGCGACGTCGAACTGTATCTGCTCGACATCGG
CCTGCTGCAAGCGGGCGCGAGCGTGAAGGGCGAATTCGAGAGCCGCCTGCGCGGCGTGATCGACGAGGCGACATCGAGCG
AGCGGCCCGTCATTCTGTTCGTCGACGAGGTGCATACGCTCGTCGGCGCGGGCGGCGCGGCGGGCACGGGCGACGCGGCG
AACCTCTTGAAGCCCGCGCTCGCGCGCGGCCTGCTGCGCACGATCGGCGCGACGACGTGGTCCGAGTACAAGCAGTACAT
CGAGAAGGACCCGGCGCTCACGCGGCGCTTCCAGCTCGTGCAGGTGCGCGAGCCGGAGGAGGGCGCGGCGCTGACGATGC
TGCGCGGACTCGCCGCGAAGCTGGAGGCGCACCACCGCGTGCTCGTGCTCGACGATGCGTTGCAGGCGGCCGTCACGCTG
TCGCATCGCTACATTCCGGCGCGGCAATTGCCCGACAAGGCGATCAGCCTGCTCGACACCGCGTGCGCGCGCGTCGCGGT
CAGCCAGCACGCGGTGCCCGCGCCGATCGAGGATGCGCGGCGGCGGATCGACAGCCTGCGCGTCGAGCGCGAACTGATCG
CGCGCGAGTGCGCGCTCGGCGCGGGCGATGCGCCGCGGCTCGATGCGATCGATGCGTCGATCGCGAGCGAACAGGCCGCG
CTCGATGCGCTCGACGCGCGCTGGCAGGCGGAGCGCGACGCGCTCGGCCAGATCGTCGACTGGCGGGCCTCGCTGCTGGC
CGACGATCCTTCGCGCGCGCTCGATGAGACGGCGCGCGCGGACGTGCAGGCGAAGCTCTCGGCTGCGCTGCGCGCGCTCG
CCGAGTTGCAGGGCGAGACGCCGCTCGTGCTGCCCGCGGTCGACACGCACGCGGTGGCCGCCGTCGTGTCCGACTGGACC
GGCATCCCGCTCGGCCGGATGGTGCGTGACGAGATGCAATCGGTGCTGAAGCTCGCCGACACGCTCGCCGAGCGTGTGGT
CGGCCAGCGGCACGCGGTCGAGCTGATCGCCGAGCGCATCCAGACCGCGCGCGCGCGGCTCGACGATCCGGCCAAGCCGC
ACGGCGTGTTCCTGCTGTGCGGGCCGTCCGGCGTCGGCAAGACCGAGACGGCGCTCGCGCTCGCCGAGACGCTGTACGGC
GGCGAGCACAACGCGATCACGATCAACATGAGCGAGTTCCAGGAGGCGCATACCGTATCGACGCTCAAGGGCGCGCCGCC
CGGCTACGTCGGCTACGGACAGGGCGGCGTGCTGACCGAGGCGGTGCGGCGGCGGCCGTACAGCGTCGTGCTGCTCGACG
AAATCGAGAAGGCGCACCGCGACGTGCACGAGATCTTCTTTCAGGTGTTCGACAAGGGCTGGATGGAAGACGGCGAAGGG
CGCTACATCGACTTTCGCAACACGGTGATCCTCCTCACGTCGAACGTCGGTTCCGAGCGCGTGATGCAGCTGTGCCGCGA
CCCGCAGCGCCTGCCCGATGCGCAGACCTTGACCGATGCGCTGCGCGCGCCGCTGCGCGAAGTGTTCCCCGCCGCGTTGT
TGGGACGCCTGAGCGTCGTGCCGTACTACCCGCTCACCGACGAGATGCTCGCGCGGATCGTCGCGTTGCAGCTCGCGCGC
ATCGAGCGCCGAATCGAATCGCACCACGGCATCGCGCTGCGCTGCGAGGATTCGGCGACCGCGCTGATCGTCGAGCGCTG
CCGGACGATCGAATCCGGCGGCCGGATGGTCGACGCGATTCTCACGCACACGGTGCTGCCGCGCATCAGCCAGGAGATCC
TGCGCGCGACGATCGAGGGGCGCGCGCTGCGGGCGATCGACGTGAGCGCCGAAGACGGCCAGTTCGTTTATCGATTCGAA
GAGGAGGGTGCGACGTGA