Detailed information of component protein


Summary

Component ID T6CP001058
Component protein type TssF
T6SS ID (Type) T6SS00112 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (624 a.a.); Nucleotide sequence (1872 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS01360
Coordinate (Strand) 320537..322408 (+)
NCBI ID WP_009895028.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 5e-235 1..620
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-623 MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARVQLKMDAEFPRFTQALLDAVYPGYVAPVPSMAIMQFTPMMNEGSLAQGYRLPAGTALRARPAASEQTACEFRTAHDLTLWPLELTAASVTGAPAYLPRSATAARRDVRGALRIRLKACGGASLAKLPIERLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGADALAHQGFDAAQALLPDDGRSFQGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLDRHDAALENSVDARHVALNCTPAVNLFARRGDRIPVHPGAREHHVVVDRSRPLDYEVYAVRRLAGEPRDDAQAREFRPFHASFAGDDGNYGAYYTVRREPRLVSARARANGTRTGYVGSETFVSLVDSECAPYDESIRYLSADTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAAIRGPSRPRAPIADAQTAWRLVSHLGLARQTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDGVHRVAFTPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINSFAECVLSSAQRGRLAQWPARVGRRPAI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9956 - -


  Protein sequence: 624 a.a.    

>T6CP001058 NC_007650:320537-322408 [Burkholderia thailandensis E264] [TssF]
MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARVQLKMDAEFPRFTQALLDAVY
PGYVAPVPSMAIMQFTPMMNEGSLAQGYRLPAGTALRARPAASEQTACEFRTAHDLTLWPLELTAASVTGAPAYLPRSAT
AARRDVRGALRIRLKACGGASLAKLPIERLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGADALAHQGF
DAAQALLPDDGRSFQGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLDRHDAALENSVDARHVALNCTPAV
NLFARRGDRIPVHPGAREHHVVVDRSRPLDYEVYAVRRLAGEPRDDAQAREFRPFHASFAGDDGNYGAYYTVRREPRLVS
ARARANGTRTGYVGSETFVSLVDSECAPYDESIRYLSADTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAAIRGPSRPR
APIADAQTAWRLVSHLGLARQTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDGVHRVAFTPVFRRLPAAGPLMFGRG
VQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINSFAECVLSSAQRGRLAQWPARVGRRPAI*

  Nucleotide sequence: 1872 bp    

>T6CP001058 NC_007650:320537-322408 [Burkholderia thailandensis E264] [TssF]
ATGGACACGCGCCTGCTCGACTACTACAACCGCGAGCTCGCGTACCTGCGCGAGTTGGGCGGCGAGTTCGCGCAGCAGTT
TCCGAAAGTGGCCGCGCGCCTGCGGATGCACGAATCGGGGCCGCCCGATCCGTACGTCGAGCGGCTGCTTGAAGGCTTCA
GCTTCCTCACCGCGCGCGTGCAGCTGAAGATGGATGCGGAGTTTCCGCGCTTCACGCAGGCGCTGCTCGACGCCGTTTAT
CCGGGCTACGTCGCGCCGGTTCCGTCGATGGCGATCATGCAGTTCACGCCGATGATGAACGAAGGCAGTCTCGCGCAAGG
CTACCGGCTGCCGGCCGGCACCGCGCTGCGCGCGCGGCCGGCCGCGTCCGAGCAGACCGCGTGCGAGTTTCGCACCGCGC
ACGATTTGACGCTGTGGCCGCTGGAACTCACGGCCGCGTCGGTGACGGGCGCGCCCGCGTACCTGCCGCGCTCGGCGACG
GCCGCGCGGCGCGACGTGCGCGGCGCGCTGCGCATCCGCCTGAAGGCGTGCGGCGGCGCGAGCCTCGCGAAACTGCCGAT
CGAGCGCCTGATGTTCCATCTCGCCGGACCCGAGCGCGACGCGCTGCATCTGCTCGAACTGATCGCCGGGCATACGATCG
GCGTCGTGTGCCACGACGCGGCGCAGCCGCCGCGCTGGCTGCACGCGCTCGGCGCGGACGCGCTCGCCCATCAGGGCTTC
GACGCCGCCCAGGCGCTGCTGCCAGACGACGGCCGCAGCTTCCAAGGCTATCGCCTGCTGCGCGAGTATTTCGCGTTTCC
CGCGCGCTTCCTGTTCTTCAGCATCGAGGGATTGCGGCCCGCGCTCGCGCGCGCGACGGGCGACACGTTCGAGCTGACGC
TGCTGCTCGACCGGCACGACGCGGCGCTCGAGAACAGCGTCGATGCGCGGCACGTCGCGTTGAACTGCACGCCGGCCGTC
AATCTGTTCGCGCGTCGCGGAGACCGCATTCCGGTCCATCCGGGCGCGCGCGAGCATCATGTCGTCGTCGATCGCAGCCG
GCCGCTCGACTACGAGGTCTATGCGGTGCGGCGGCTCGCGGGCGAGCCGCGCGACGACGCCCAGGCGCGCGAGTTCCGGC
CGTTCCACGCGTCGTTCGCGGGCGACGACGGCAATTACGGCGCGTACTACACGGTGCGCCGCGAGCCGCGGCTCGTATCC
GCGCGCGCGCGCGCGAACGGCACGCGCACGGGCTACGTCGGCAGCGAGACGTTCGTGTCGCTCGTCGACAGCGAGTGCGC
GCCGTACGACGAATCGATCCGCTATCTGTCCGCCGACACGCTGTGCACGAATCGCGATCTCGTGCTGCTGCTGCCGGCGG
GCGACGCGAACGCGTTCACGCTGCGCGTGTCGGCGCCCGTCGAGCGGATCGCCGCGATTCGCGGGCCGTCGCGGCCGCGC
GCGCCGATCGCCGATGCGCAGACCGCGTGGCGGCTCGTGAGCCACCTCGGGCTCGCGCGCCAAACGCTGACCGACGTCGA
CGACGAAGAAGGCGCGCGCGTGCTGCGCGAACTGCTCGGCCTGCATGCGGACCCGGCCGACGCGGCGATGCGCCGGCAGA
TCGACGGCGTGCATCGCGTCGCGTTCACGCCGGTGTTTCGCAGGCTGCCCGCAGCCGGGCCGCTGATGTTCGGGCGCGGC
GTGCAGGTGGATGTGACCGTCGACGATCATGCGTTTTCCGGCGACAGCCCGTATCTGCTCGGCGCGGTGCTCGAGCAGTT
TTTCGCGCGGCACGTGTCGATCAACTCGTTCGCCGAATGCGTGCTGAGCAGCGCGCAGCGCGGCAGGCTCGCGCAATGGC
CGGCGCGCGTCGGCAGGCGGCCCGCGATATGA