Detailed information of component protein


Summary

Component ID T6CP001059
Component protein type TssG
T6SS ID (Type) T6SS00112 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS01365
Coordinate (Strand) 322372..323688 (+)
NCBI ID WP_009895030.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 6.4e-116 88..391
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-438 MAGARRQAARDMTAQPKPNPEPAGADAGSHANSKAGRRAGAASNAEPGAMPNADWDAAADATPNATPSATTQADAARRDAWWRRLRAAPHGYDLFHALRWLDALSPEHAPSGYASRPRDEPVRFGQAPSLAFAAAMLADVRDEAPRPRVAIHGFGLFGPNGPLPSHLTEYAYERAAQHDDPTFAAFADLFHHRLILLFYRAWADAQPTVSLDRPARARFDRYVASLIGPCDARSCDAPRGANAIAPHAKYHQAGHLVRHTRNPEGLVQILQRYFGVRARIVEHVPRWVMLDRAQRCAIRATRPTQPLGGAVLGRAVRDAQSRFRIVLGPLTLDEYRRFLPGGAHAQQLAQWVREYVGIEFDWDVQLELARGEVPALALGSRDGLGRTAWLGERLDPGPARDLVLGYDGRARGGAGVARARSTAADQAAAADAFDRQPA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7432 - -


  Protein sequence: 439 a.a.    

>T6CP001059 NC_007650:322372-323688 [Burkholderia thailandensis E264] [TssG]
MAGARRQAARDMTAQPKPNPEPAGADAGSHANSKAGRRAGAASNAEPGAMPNADWDAAADATPNATPSATTQADAARRDA
WWRRLRAAPHGYDLFHALRWLDALSPEHAPSGYASRPRDEPVRFGQAPSLAFAAAMLADVRDEAPRPRVAIHGFGLFGPN
GPLPSHLTEYAYERAAQHDDPTFAAFADLFHHRLILLFYRAWADAQPTVSLDRPARARFDRYVASLIGPCDARSCDAPRG
ANAIAPHAKYHQAGHLVRHTRNPEGLVQILQRYFGVRARIVEHVPRWVMLDRAQRCAIRATRPTQPLGGAVLGRAVRDAQ
SRFRIVLGPLTLDEYRRFLPGGAHAQQLAQWVREYVGIEFDWDVQLELARGEVPALALGSRDGLGRTAWLGERLDPGPAR
DLVLGYDGRARGGAGVARARSTAADQAAAADAFDRQPA*

  Nucleotide sequence: 1317 bp    

>T6CP001059 NC_007650:322372-323688 [Burkholderia thailandensis E264] [TssG]
ATGGCCGGCGCGCGTCGGCAGGCGGCCCGCGATATGACGGCGCAACCGAAGCCGAATCCGGAGCCCGCCGGCGCGGACGC
GGGCTCGCACGCGAACTCGAAAGCGGGCCGGCGCGCGGGCGCGGCTTCGAATGCGGAGCCGGGCGCGATGCCGAATGCGG
ATTGGGACGCGGCCGCGGATGCGACGCCGAACGCAACGCCAAGCGCGACGACGCAGGCCGATGCCGCGCGCCGCGACGCA
TGGTGGCGCCGCCTGCGCGCCGCGCCGCACGGCTACGACCTGTTCCACGCGCTGCGCTGGCTCGACGCGCTGTCGCCGGA
GCACGCGCCGTCCGGCTACGCGTCGCGGCCGCGCGACGAGCCGGTGCGCTTCGGCCAGGCGCCGTCGCTCGCGTTCGCGG
CGGCGATGCTCGCCGACGTGCGCGACGAGGCCCCGAGGCCGCGCGTGGCGATTCACGGCTTCGGGCTGTTCGGGCCGAAC
GGGCCGCTGCCGTCGCATCTGACCGAGTATGCGTACGAGCGCGCGGCGCAGCATGACGATCCGACCTTCGCCGCGTTCGC
CGACCTGTTTCATCATCGGCTGATCCTGCTGTTCTATCGCGCATGGGCCGACGCGCAGCCGACCGTCAGTCTCGACCGGC
CGGCGCGCGCGCGGTTCGATCGCTACGTGGCCAGCCTGATCGGGCCGTGCGATGCGCGTTCATGCGATGCGCCGCGCGGT
GCTAACGCGATCGCGCCGCACGCGAAGTATCACCAGGCGGGCCATCTGGTGCGGCACACGCGCAACCCGGAGGGGCTCGT
GCAGATCCTGCAGCGCTATTTCGGCGTGCGGGCGCGCATCGTCGAGCACGTGCCGCGGTGGGTGATGCTCGATCGCGCGC
AGCGCTGCGCGATCCGCGCGACGCGGCCGACACAGCCGCTCGGCGGCGCCGTGCTCGGCCGTGCGGTGCGCGACGCGCAA
TCGCGCTTTCGGATCGTGCTCGGCCCGCTGACGCTCGACGAGTACCGGCGGTTCCTGCCGGGCGGCGCGCACGCGCAGCA
GCTCGCGCAATGGGTGCGCGAATACGTCGGCATCGAATTCGACTGGGACGTGCAGCTCGAGCTCGCGCGCGGCGAAGTGC
CGGCGCTCGCGCTCGGCAGCCGCGACGGACTCGGCCGCACCGCGTGGCTCGGCGAGCGGCTCGATCCCGGCCCCGCGCGC
GACCTCGTGCTCGGCTACGACGGGCGCGCGCGCGGCGGCGCGGGCGTTGCGCGAGCCCGATCGACCGCGGCCGATCAGGC
GGCCGCCGCCGATGCGTTTGATCGTCAACCTGCCTGA