Detailed information of component protein


Summary

Component ID T6CP001050
Component protein type TssK
T6SS ID (Type) T6SS00112 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (469 a.a.); Nucleotide sequence (1407 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS01310
Coordinate (Strand) 306113..307519 (+)
NCBI ID WP_009895006.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 8e-160 30..466
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-468 MNEPVLSATPAAALRQRVIWTEGMFLRPQHFQQLERHWERYVGMRCLPLQGFYWGYDALQIDRELLALGKVALLAATGVMRDGTPFDLSHPDDRPEPLDVPADAKDQLVVLALPLWRGGAQEVSFGGEGNGSGNGSGNGNAGAGFARYVVREHEIADANEVALGPALLQTGRLNVRLMLESELTGDWEALGVARIVERRTDGRLLVDDGYIPPRLVAQRDPVLLRHTRELHGLLTQRSEALGERLSEPGRGGVSEVADFLLLQLVNRYLALTWHAQQDVAAHPETLFRDWLKLACDLSTFTAAGRRPQSLAIYRHDDLRASFGELMAELRRSLSTVLEQNAIQIELRDAGNGMKVATIADPALRDTAGFVLAVRADVPADSLRARFPAQAKLGPVERIRDLVQLQLPGIAMRQLPVAPRQIPYHAGHTYFEIDKGGEMWKQLERSGGLAFHFAGEFPGLSMEFWAIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9950 - -


  Protein sequence: 469 a.a.    

>T6CP001050 NC_007650:306113-307519 [Burkholderia thailandensis E264] [TssK]
MNEPVLSATPAAALRQRVIWTEGMFLRPQHFQQLERHWERYVGMRCLPLQGFYWGYDALQIDRELLALGKVALLAATGVM
RDGTPFDLSHPDDRPEPLDVPADAKDQLVVLALPLWRGGAQEVSFGGEGNGSGNGSGNGNAGAGFARYVVREHEIADANE
VALGPALLQTGRLNVRLMLESELTGDWEALGVARIVERRTDGRLLVDDGYIPPRLVAQRDPVLLRHTRELHGLLTQRSEA
LGERLSEPGRGGVSEVADFLLLQLVNRYLALTWHAQQDVAAHPETLFRDWLKLACDLSTFTAAGRRPQSLAIYRHDDLRA
SFGELMAELRRSLSTVLEQNAIQIELRDAGNGMKVATIADPALRDTAGFVLAVRADVPADSLRARFPAQAKLGPVERIRD
LVQLQLPGIAMRQLPVAPRQIPYHAGHTYFEIDKGGEMWKQLERSGGLAFHFAGEFPGLSMEFWAIRG*

  Nucleotide sequence: 1407 bp    

>T6CP001050 NC_007650:306113-307519 [Burkholderia thailandensis E264] [TssK]
ATGAACGAGCCGGTATTGTCCGCGACCCCCGCGGCGGCGTTGCGCCAGCGTGTGATCTGGACCGAGGGCATGTTCCTGCG
GCCGCAGCATTTCCAGCAGCTCGAGCGGCATTGGGAACGCTACGTCGGCATGCGCTGCCTGCCGTTGCAGGGCTTCTACT
GGGGCTACGACGCGCTTCAAATCGACCGCGAGCTGCTCGCGCTCGGCAAGGTCGCGCTGCTCGCCGCGACCGGCGTGATG
CGCGACGGCACGCCGTTCGATCTGTCGCATCCGGACGATCGGCCCGAGCCGCTCGACGTGCCCGCCGACGCGAAGGATCA
GCTCGTCGTGCTCGCGCTGCCGCTCTGGCGCGGCGGCGCGCAGGAGGTGTCGTTCGGCGGCGAAGGCAACGGAAGCGGCA
ACGGAAGCGGCAACGGCAACGCGGGCGCGGGTTTCGCGCGCTACGTCGTGCGCGAGCACGAAATCGCCGACGCGAACGAG
GTCGCGCTCGGCCCCGCGCTGTTGCAGACCGGTCGCCTGAACGTGCGCCTGATGCTCGAATCCGAATTGACGGGCGACTG
GGAGGCGCTCGGCGTCGCGCGGATCGTCGAGCGGCGCACCGATGGGCGGCTGCTCGTCGACGACGGCTACATTCCGCCGC
GACTCGTCGCGCAGCGCGATCCGGTGCTGCTGCGTCACACGCGCGAGCTGCACGGGCTGCTCACGCAGCGCAGCGAGGCG
CTCGGCGAGCGCCTGTCGGAGCCGGGGCGCGGCGGCGTGTCCGAAGTGGCCGACTTCCTGCTGCTGCAACTCGTCAACCG
CTATCTGGCGCTCACGTGGCACGCGCAGCAGGACGTCGCCGCGCATCCGGAGACGCTGTTCCGGGATTGGCTGAAGCTCG
CGTGCGATCTGAGCACGTTCACTGCGGCGGGCCGTCGGCCGCAGTCGCTCGCCATCTACCGGCACGACGATCTGCGCGCG
AGTTTCGGCGAACTGATGGCGGAGCTGCGCCGCTCGCTGTCGACGGTGCTCGAGCAGAACGCGATCCAGATCGAGCTGCG
CGATGCGGGCAACGGGATGAAGGTCGCGACGATCGCCGATCCGGCGCTGCGCGATACCGCGGGCTTCGTGCTCGCGGTGC
GCGCCGACGTGCCGGCCGACAGCCTGCGTGCGCGCTTTCCCGCGCAGGCGAAGCTCGGGCCCGTCGAGCGGATTCGCGAT
CTCGTGCAATTGCAGCTGCCGGGCATCGCGATGCGGCAGTTGCCCGTCGCGCCTCGGCAGATTCCGTATCACGCGGGCCA
CACGTACTTCGAGATCGACAAGGGCGGCGAGATGTGGAAGCAGCTCGAACGCTCCGGCGGCCTCGCATTTCATTTCGCCG
GCGAATTCCCGGGACTCTCGATGGAGTTCTGGGCGATTCGCGGGTGA