Detailed information of component protein


Summary

Component ID T6CP001052
Component protein type TssM
T6SS ID (Type) T6SS00112 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (1210 a.a.); Nucleotide sequence (3630 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS01320
Coordinate (Strand) 308851..312480 (+)
NCBI ID WP_009895010.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.4e-90 217..475
IcmF-related PF06761.14 1.4e-88 527..835
IcmF_C PF06744.14 2.2e-26 1086..1190
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-16 MSHAVARIVRPLPSRE
Transmembrane helix 17-39 IWTFAGLVGLACFVWLAGPLFAF
Outside 40-48 AEFHPFESG
Transmembrane helix 49-68 WARALTIAALFVAWGARIAW
Inside 69-466 RNWRAGQLNAQLLNQLREASPRPAAPGDPARAQLDELRSRFDEASTLLKKVRFGAADGARKGLPQWLERMSRQYLYQLPWYVFIGAPGSGKTTALVNSGLSFPLAEQFGRAAIRGVGGTRHCDWWFTNDAVLIDTAGRYTTHESNRALDEAEWNGFVDLLKKYRARQPLNGAMLTISVADLLGASEAERTQHAMVLRKRLLELRSQLGIRFPVYLLVTKADLLAGFAEYFGGFGRAECAQVWGFTFPLAESEAPGFDLRAAFDREYRLLHKRLNDGLPELLASQTDAHQREMSYLLPQQIADLQDMLGQFVAEVFSVSSFEPMPMLRGVYLTSGTQEGTAFDRVMSGIKRFLKIEGVPPAAQTGSTGRSFFLKSLLQDHIFREAALAGSNLRWHRRQR
Transmembrane helix 467-489 VLQIVGYAAIVLLCVAVLFAWLR
Outside 490-1209 SYSRNRGYLDQVAARVPAVDAQISRAKFTGAADVVQLLPVLDELSGLPSAGGVDLRHPPLAYRWGLFQGEKIEEASDAVYRRALDDVLLPIAASRMEQALREARPDEVEYAYAALKAYLMLYDGAHYDPAFVQAVVDLEMERSLPADFSSAQRSALRSHLGALFGNRVAVSPFPMNERLVADVRERLRQVPFSQRLYRQLARTLRPSTATYDFSVARAVGPDASLVFRRQSGKSLADGVPGLYTRDGYRNVFAPRLPGAIDAYGREEVWVLNLGASETPNPADAAAWARDIRQLYLNDYIKNWDDYLADIRLQHTSTLAQSIQVARTLSSADSPLTRLMVALARVTPLGDAPGGARNLASRAQDKVDEARNSLAQIFAGQPGADAGAAAASPASPEQIVDSHFAGLRAFAPGGGDQAASFDAVLKAIDALYTYLTATDDALRGGATPPPSDAPARLRAQAGRLPTPFREVLDDLSNVANGSVASVEQRNVAQRAGANVGDFCRQAIAGRYPFARGASRDVAPSDFAQMFAAGGLMDDFFQKNLQTLVDTTTHPWRFNNRNAEADPAAAAMLGSFEKAAVIRDVYFGGGARTAQIKVEIVPLEMDPSISEMVLDVDGQIVRYAHGPQVPTAVQWPGPRGSDQVRLQVTEQSGATGGFTTEGPWALHRLFDRAGVSGGRGPEQMVARFAVDGKPIVLQVTASSVRNPFRLPQMESFTCPPKQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9291 - -


  Protein sequence: 1210 a.a.    

>T6CP001052 NC_007650:308851-312480 [Burkholderia thailandensis E264] [TssM]
MSHAVARIVRPLPSREIWTFAGLVGLACFVWLAGPLFAFAEFHPFESGWARALTIAALFVAWGARIAWRNWRAGQLNAQL
LNQLREASPRPAAPGDPARAQLDELRSRFDEASTLLKKVRFGAADGARKGLPQWLERMSRQYLYQLPWYVFIGAPGSGKT
TALVNSGLSFPLAEQFGRAAIRGVGGTRHCDWWFTNDAVLIDTAGRYTTHESNRALDEAEWNGFVDLLKKYRARQPLNGA
MLTISVADLLGASEAERTQHAMVLRKRLLELRSQLGIRFPVYLLVTKADLLAGFAEYFGGFGRAECAQVWGFTFPLAESE
APGFDLRAAFDREYRLLHKRLNDGLPELLASQTDAHQREMSYLLPQQIADLQDMLGQFVAEVFSVSSFEPMPMLRGVYLT
SGTQEGTAFDRVMSGIKRFLKIEGVPPAAQTGSTGRSFFLKSLLQDHIFREAALAGSNLRWHRRQRVLQIVGYAAIVLLC
VAVLFAWLRSYSRNRGYLDQVAARVPAVDAQISRAKFTGAADVVQLLPVLDELSGLPSAGGVDLRHPPLAYRWGLFQGEK
IEEASDAVYRRALDDVLLPIAASRMEQALREARPDEVEYAYAALKAYLMLYDGAHYDPAFVQAVVDLEMERSLPADFSSA
QRSALRSHLGALFGNRVAVSPFPMNERLVADVRERLRQVPFSQRLYRQLARTLRPSTATYDFSVARAVGPDASLVFRRQS
GKSLADGVPGLYTRDGYRNVFAPRLPGAIDAYGREEVWVLNLGASETPNPADAAAWARDIRQLYLNDYIKNWDDYLADIR
LQHTSTLAQSIQVARTLSSADSPLTRLMVALARVTPLGDAPGGARNLASRAQDKVDEARNSLAQIFAGQPGADAGAAAAS
PASPEQIVDSHFAGLRAFAPGGGDQAASFDAVLKAIDALYTYLTATDDALRGGATPPPSDAPARLRAQAGRLPTPFREVL
DDLSNVANGSVASVEQRNVAQRAGANVGDFCRQAIAGRYPFARGASRDVAPSDFAQMFAAGGLMDDFFQKNLQTLVDTTT
HPWRFNNRNAEADPAAAAMLGSFEKAAVIRDVYFGGGARTAQIKVEIVPLEMDPSISEMVLDVDGQIVRYAHGPQVPTAV
QWPGPRGSDQVRLQVTEQSGATGGFTTEGPWALHRLFDRAGVSGGRGPEQMVARFAVDGKPIVLQVTASSVRNPFRLPQM
ESFTCPPKQ*

  Nucleotide sequence: 3630 bp    

>T6CP001052 NC_007650:308851-312480 [Burkholderia thailandensis E264] [TssM]
ATGAGCCACGCTGTCGCACGCATCGTTCGCCCGCTGCCGTCGCGGGAAATCTGGACGTTCGCCGGCCTCGTCGGGCTGGC
GTGCTTCGTCTGGCTCGCCGGGCCGCTGTTCGCGTTCGCCGAGTTCCACCCGTTCGAGAGCGGCTGGGCGCGCGCGCTGA
CGATCGCCGCGCTGTTCGTCGCGTGGGGCGCGCGGATCGCGTGGCGCAACTGGCGCGCGGGCCAGCTGAACGCGCAGTTG
CTGAACCAGTTGCGCGAAGCGTCGCCGCGGCCGGCCGCGCCGGGCGACCCCGCGCGCGCGCAGCTCGACGAGCTGCGCAG
CCGCTTCGACGAAGCGTCGACGCTCCTGAAGAAAGTTCGCTTCGGCGCCGCCGACGGCGCGCGCAAGGGCCTGCCTCAAT
GGCTCGAACGGATGTCGCGCCAGTATCTGTACCAACTGCCGTGGTACGTGTTCATCGGCGCGCCCGGCTCGGGCAAGACG
ACGGCGCTCGTCAACTCGGGGCTCAGCTTTCCGCTCGCCGAGCAGTTCGGGCGCGCGGCGATTCGCGGCGTCGGCGGCAC
GCGGCACTGCGACTGGTGGTTCACGAACGACGCGGTGCTGATCGACACCGCGGGCCGCTATACGACGCATGAGAGCAATC
GCGCGCTCGACGAGGCCGAATGGAACGGCTTCGTCGATCTGCTGAAGAAGTACCGCGCGCGCCAGCCGCTGAACGGCGCG
ATGCTGACGATCAGCGTCGCCGATTTGCTCGGCGCGTCCGAGGCGGAGCGCACGCAGCACGCGATGGTGCTGCGCAAGCG
CCTGCTCGAGCTGCGCTCGCAGCTCGGCATTCGCTTTCCGGTGTACCTGCTCGTGACGAAGGCGGACCTGCTCGCCGGCT
TCGCCGAATACTTCGGCGGCTTCGGCCGCGCGGAGTGCGCGCAGGTGTGGGGCTTCACGTTCCCGCTCGCCGAGAGCGAG
GCGCCCGGCTTCGACTTGCGCGCGGCGTTCGATCGCGAATATCGGCTGCTGCACAAACGGCTGAACGACGGGCTGCCCGA
GCTGCTCGCGTCGCAGACCGATGCGCACCAGCGCGAGATGAGCTACCTGCTGCCGCAGCAGATCGCCGATCTGCAGGACA
TGCTCGGCCAGTTCGTCGCCGAGGTGTTCTCGGTGTCGAGCTTCGAGCCGATGCCGATGCTGCGCGGCGTGTACCTGACG
AGCGGCACGCAGGAAGGCACCGCGTTCGACCGCGTGATGAGCGGGATCAAGCGCTTCCTGAAGATCGAGGGCGTGCCGCC
CGCCGCGCAGACGGGCTCGACCGGCCGCAGCTTCTTCCTGAAATCGCTGCTGCAGGACCACATCTTCCGCGAGGCGGCGC
TCGCCGGCAGCAATCTGCGCTGGCATCGGCGGCAGCGCGTGCTGCAGATCGTCGGCTACGCGGCGATCGTGCTGCTGTGC
GTCGCGGTGCTGTTCGCGTGGCTGCGCAGCTACTCGCGCAATCGCGGCTACCTCGACCAGGTCGCCGCGCGCGTGCCGGC
CGTCGACGCGCAGATCAGCCGCGCGAAGTTCACGGGCGCGGCCGACGTCGTCCAGCTGCTGCCCGTGCTCGACGAGCTGA
GCGGGCTGCCGAGCGCGGGCGGCGTCGATTTGCGGCATCCGCCGCTTGCGTATCGCTGGGGCCTCTTTCAGGGCGAGAAG
ATCGAGGAGGCGAGCGACGCCGTGTACCGCCGCGCGCTCGACGACGTGCTGCTGCCGATCGCCGCGAGCCGCATGGAGCA
GGCGCTGCGCGAAGCGCGGCCCGACGAGGTCGAGTACGCGTACGCGGCGCTCAAGGCGTACCTGATGCTCTACGACGGCG
CGCATTACGATCCCGCGTTCGTGCAGGCTGTCGTCGATCTCGAGATGGAGCGCTCGCTGCCCGCCGATTTCTCGTCCGCG
CAGCGCAGCGCGCTGCGCTCGCATCTCGGCGCGCTGTTCGGCAATCGCGTCGCGGTGTCGCCGTTCCCGATGAACGAACG
GCTCGTGGCCGACGTGCGCGAGCGGCTGCGGCAGGTGCCGTTCTCGCAGCGGCTGTACCGGCAGCTCGCGCGCACGCTGC
GCCCGAGCACCGCGACGTACGACTTCAGCGTCGCGCGCGCGGTCGGGCCGGACGCGTCGCTCGTGTTCCGCCGGCAGAGC
GGCAAGAGCCTCGCCGATGGCGTGCCGGGCCTCTACACGCGCGACGGCTACCGCAACGTGTTCGCGCCGCGGCTGCCCGG
CGCGATCGATGCGTACGGGCGCGAGGAGGTGTGGGTGCTGAATCTCGGCGCGTCCGAGACCCCGAATCCGGCCGATGCGG
CCGCCTGGGCGCGCGACATCCGGCAGCTCTATCTGAACGACTACATCAAGAACTGGGACGACTATCTGGCCGACATCCGG
CTGCAGCACACGTCGACGCTCGCGCAGAGCATCCAGGTCGCGCGCACGCTGTCGTCGGCCGATTCGCCGCTCACGCGGCT
GATGGTCGCGCTCGCGCGCGTCACGCCGCTCGGCGATGCGCCCGGCGGCGCGCGCAACCTCGCGTCGCGCGCGCAGGACA
AGGTCGACGAGGCGCGCAATTCGCTTGCGCAGATCTTCGCCGGCCAGCCGGGCGCGGACGCGGGCGCGGCGGCCGCCTCG
CCCGCGAGCCCCGAGCAGATCGTCGACAGCCACTTCGCGGGGCTGCGCGCGTTCGCGCCGGGCGGCGGCGATCAGGCGGC
GTCGTTCGACGCGGTGCTCAAGGCGATCGACGCGCTGTACACGTATTTGACCGCGACCGACGACGCGCTGCGCGGCGGCG
CGACGCCGCCGCCGTCGGACGCGCCCGCGCGGCTGCGCGCGCAGGCGGGCCGGCTGCCGACGCCGTTTCGCGAGGTGCTC
GACGATCTGTCGAACGTCGCGAACGGCAGCGTCGCGAGCGTCGAGCAGCGCAACGTCGCGCAGCGCGCGGGCGCGAACGT
CGGCGATTTCTGCCGGCAGGCGATCGCCGGGCGCTATCCGTTCGCGCGCGGCGCGTCGCGCGACGTCGCGCCGTCCGACT
TCGCGCAGATGTTCGCGGCGGGCGGCCTGATGGACGACTTCTTCCAGAAGAACCTGCAGACGCTCGTCGACACGACCACG
CACCCGTGGCGCTTCAACAACCGCAACGCCGAAGCCGACCCGGCGGCGGCCGCGATGCTCGGCTCGTTCGAGAAGGCCGC
GGTGATCCGCGACGTCTATTTCGGAGGCGGCGCGCGGACCGCGCAGATCAAGGTCGAGATCGTACCGCTCGAAATGGACC
CGTCGATCTCGGAGATGGTGCTCGACGTCGACGGCCAGATCGTCCGCTACGCGCACGGCCCGCAGGTGCCGACGGCGGTG
CAGTGGCCCGGCCCGCGCGGCAGCGATCAGGTGCGGCTGCAGGTGACCGAGCAGTCGGGCGCGACGGGCGGCTTCACGAC
CGAGGGGCCGTGGGCGCTGCACCGGCTGTTCGATCGCGCGGGCGTGTCGGGCGGGCGCGGGCCCGAGCAGATGGTCGCGA
GATTCGCGGTGGACGGCAAGCCGATCGTGCTGCAGGTGACGGCGAGCAGCGTGCGCAACCCGTTCCGGCTGCCGCAGATG
GAGTCCTTTACATGCCCTCCGAAGCAATGA