Detailed information of component protein


Summary

Component ID T6CP011371
Component protein type FHA
T6SS ID (Type) T6SS00112 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (482 a.a.); Nucleotide sequence (1446 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS01295
Coordinate (Strand) 303044..304489 (-)
NCBI ID WP_009895000.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 3.6e-09 29..96
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-481 MQLTVIEHAGEPVGTDDRNAVVFHPPGGTIGRDSDNHLVLRDDTRQISRLQALLQVADDACLLKNLSSVSTIEVNRVPIGYAQAQRLNMGDIIRIGPYLLRAEPDDAMIERTIEAAAAAPPAASASASHAQTRGAGNKLWGLLHDRFGLGRTQDASGKSGERPGAAPSRHHDSPARAAPRELHQLSTDPLDLFAQPQGHLDAQAGVAREGDGRGPPTGTPSDHAPEWTQHVRVQPAKSAPAAAAHSDAPPAHPGDANDMNDAVETRDAHDVPSRVRASTPATPETLLQAFFEGAGLDAAAERHHWSAEQLFVAGQLLALFANGTVELLSSRSILKREVKADMTMLLDRENNPLKLLPDGSAVLRQMFGLPLPGFMTPQSAVSDAFQDLHAHQIGMVAGMRAALMDLLTRFSPQRLRERDAEPRWHEKRVPVLYKARLWDRYVATHRDTLFAIEDDFASVFGKAFLCAYDAEVENYRGRCRR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9906 - -


  Protein sequence: 482 a.a.    

>T6CP011371 NC_007650:c304489-303044 [Burkholderia thailandensis E264] [FHA]
MQLTVIEHAGEPVGTDDRNAVVFHPPGGTIGRDSDNHLVLRDDTRQISRLQALLQVADDACLLKNLSSVSTIEVNRVPIG
YAQAQRLNMGDIIRIGPYLLRAEPDDAMIERTIEAAAAAPPAASASASHAQTRGAGNKLWGLLHDRFGLGRTQDASGKSG
ERPGAAPSRHHDSPARAAPRELHQLSTDPLDLFAQPQGHLDAQAGVAREGDGRGPPTGTPSDHAPEWTQHVRVQPAKSAP
AAAAHSDAPPAHPGDANDMNDAVETRDAHDVPSRVRASTPATPETLLQAFFEGAGLDAAAERHHWSAEQLFVAGQLLALF
ANGTVELLSSRSILKREVKADMTMLLDRENNPLKLLPDGSAVLRQMFGLPLPGFMTPQSAVSDAFQDLHAHQIGMVAGMR
AALMDLLTRFSPQRLRERDAEPRWHEKRVPVLYKARLWDRYVATHRDTLFAIEDDFASVFGKAFLCAYDAEVENYRGRCR
R*

  Nucleotide sequence: 1446 bp    

>T6CP011371 NC_007650:c304489-303044 [Burkholderia thailandensis E264] [FHA]
ATGCAACTGACCGTTATCGAACACGCGGGCGAGCCGGTCGGCACCGACGACCGCAACGCCGTCGTGTTTCACCCGCCGGG
CGGCACGATCGGCCGCGACAGCGACAATCACCTCGTGCTGCGCGACGACACGCGGCAAATCTCGCGCCTTCAGGCGCTGC
TGCAAGTGGCCGACGACGCGTGCCTGCTGAAGAACCTGAGCAGCGTGTCGACGATCGAGGTGAACCGCGTGCCGATCGGC
TATGCGCAGGCGCAGCGCCTGAACATGGGCGACATCATCCGGATCGGCCCTTACCTGCTGCGCGCGGAGCCCGACGACGC
GATGATCGAGCGGACCATCGAAGCGGCGGCCGCCGCGCCGCCGGCGGCATCGGCATCGGCATCGCACGCGCAGACGCGGG
GCGCGGGCAACAAGCTGTGGGGCCTGCTGCACGATCGCTTCGGGCTCGGCAGGACGCAGGACGCGAGCGGCAAGTCCGGC
GAGCGGCCGGGCGCCGCGCCGTCGCGCCATCACGATTCGCCGGCGCGCGCCGCGCCGCGCGAGCTGCATCAGCTATCGAC
CGATCCGCTCGACCTGTTCGCGCAGCCGCAAGGCCATCTCGATGCGCAGGCCGGCGTCGCGCGAGAAGGCGACGGCCGCG
GGCCGCCAACCGGCACGCCATCGGATCACGCGCCCGAATGGACGCAGCACGTCCGCGTGCAGCCGGCGAAATCCGCGCCG
GCCGCCGCCGCGCATTCGGACGCGCCGCCCGCGCATCCGGGCGACGCGAACGATATGAATGACGCAGTCGAGACGCGCGA
CGCGCACGACGTGCCGTCGCGCGTGCGCGCATCGACGCCGGCGACGCCCGAGACGCTGCTGCAGGCGTTCTTCGAGGGCG
CGGGGCTCGACGCCGCGGCCGAGCGGCACCATTGGTCCGCGGAGCAGTTGTTCGTCGCGGGGCAGTTGCTCGCGCTGTTC
GCGAACGGCACGGTCGAGCTGCTGTCGTCGCGCAGCATCCTGAAGCGCGAAGTGAAAGCCGACATGACGATGCTGCTCGA
TCGCGAGAACAATCCGCTGAAGCTGCTGCCGGACGGCAGCGCGGTGCTGCGCCAGATGTTCGGGCTGCCGCTGCCGGGCT
TCATGACGCCGCAAAGCGCGGTGTCCGACGCGTTCCAGGATCTGCACGCGCATCAGATCGGCATGGTGGCCGGCATGCGC
GCCGCGCTGATGGACCTGCTCACGCGCTTCTCGCCGCAGCGCCTGCGCGAGCGCGACGCCGAGCCGCGGTGGCACGAGAA
GCGCGTGCCCGTGCTGTACAAGGCGCGCTTGTGGGACCGCTACGTGGCCACGCATCGCGACACGCTGTTCGCGATCGAAG
ACGATTTCGCGTCCGTGTTCGGCAAGGCGTTCCTCTGCGCCTACGACGCGGAAGTGGAGAACTATCGCGGGCGCTGCCGG
CGCTGA