Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00053  |
| T6SS type | Type Unknown |
| Strain | Photorhabdus luminescens subsp. laumondii TTO1 |
| Replicon (RefSeq) | chromosome (NC_005126) |
| Location | 4906404..4954812 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PLU_RS20710 | 4901504..4903051 | - | 1548 | WP_011148292.1 | fatty acid--CoA ligase family protein | ||
| PLU_RS20715 | 4903075..4903323 | - | 249 | WP_011148293.1 | acyl carrier protein | ||
| PLU_RS20720 | 4903358..4904473 | - | 1116 | WP_011148294.1 | hypothetical protein | ||
| PLU_RS20725 | 4904466..4905752 | - | 1287 | WP_011148295.1 | beta-ketoacyl-[acyl-carrier-protein] synthase family protein | ||
| PLU_RS20730 | 4906404..4907219 | - | 816 | WP_011148296.1 | cyclase family protein | ||
| PLU_RS20735 | 4907212..4907925 | - | 714 | WP_011148297.1 | hypothetical protein | ||
| PLU_RS20740 | 4907928..4908704 | - | 777 | WP_011148298.1 | SDR family oxidoreductase | ||
| PLU_RS20745 | 4909679..4909996 | - | 318 | WP_011148299.1 | helix-turn-helix domain-containing protein | ||
| PLU_RS26210 | 4910087..4910500 | - | 414 | WP_011148300.1 | type II toxin-antitoxin system RelE/ParE family toxin | ||
| PLU_RS26215 | 4911020..4911397 | - | 378 | WP_109791999.1 | hypothetical protein | ||
| T6CP008435 | TssA | PLU_RS20760 | 4911700..4913079 | - | 1380 | WP_011148302.1 | type VI secretion system ImpA family N-terminal domain-containing protein |
| T6CP000461 | TssE | PLU_RS20765 (tssE) | 4913131..4913565 | - | 435 | WP_011148303.1 | type VI secretion system baseplate subunit TssE |
| T6CP000462 | TssJ | PLU_RS20770 (tssJ) | 4913569..4914105 | - | 537 | WP_011148304.1 | type VI secretion system lipoprotein TssJ |
| T6CP000463 | TssG | PLU_RS20775 (tssG) | 4914086..4915162 | - | 1077 | WP_041380379.1 | type VI secretion system baseplate subunit TssG |
| T6CP000464 | TssF | PLU_RS20780 (tssF) | 4915126..4916892 | - | 1767 | WP_011148306.1 | type VI secretion system baseplate subunit TssF |
| T6CP008436 | TssA | PLU_RS20785 (tssA) | 4916971..4918569 | - | 1599 | WP_011148307.1 | type VI secretion system protein TssA |
| PLU_RS20790 | 4918735..4919496 | - | 762 | WP_041380381.1 | hypothetical protein | ||
| PLU_RS20795 | 4919689..4920690 | - | 1002 | WP_011148310.1 | hypothetical protein | ||
| PLU_RS20800 | 4920767..4921054 | - | 288 | WP_125043791.1 | hypothetical protein | ||
| PLU_RS20805 | 4921260..4922642 | + | 1383 | WP_011144727.1 | IS4-like element ISPlu9 family transposase | ||
| PLU_RS20810 | 4922658..4923251 | - | 594 | pseudogene | hypothetical protein | ||
| PLU_RS20815 | 4923248..4925854 | - | 2607 | WP_011148311.1 | hypothetical protein | ||
| T6CP008437 | TssD | PLU_RS20820 | 4925955..4926446 | - | 492 | WP_011148312.1 | Hcp family type VI secretion system effector |
| T6CP000465 | TssM | PLU_RS20830 | 4927191..4930550 | - | 3360 | WP_011148315.1 | type VI secretion protein VasK |
| PLU_RS20835 | 4930543..4931718 | - | 1176 | WP_011148316.1 | hypothetical protein | ||
| T6CP011445 | PAAR | PLU_RS20840 | 4931721..4931993 | - | 273 | WP_041380383.1 | PAAR domain-containing protein |
| PLU_RS20845 | 4932024..4932692 | - | 669 | WP_011148318.1 | hypothetical protein | ||
| PLU_RS20850 | 4932878..4933867 | - | 990 | WP_011148319.1 | hypothetical protein | ||
| PLU_RS20855 | 4933945..4934955 | - | 1011 | WP_011148320.1 | hypothetical protein | ||
| PLU_RS20860 | 4934952..4937552 | - | 2601 | WP_011148321.1 | hypothetical protein | ||
| PLU_RS20865 | 4937552..4938592 | - | 1041 | WP_011148322.1 | DUF4123 domain-containing protein | ||
| T6CP000466 | TssI | PLU_RS20870 (vgrG) | 4938603..4940981 | - | 2379 | WP_011148323.1 | type VI secretion system tip protein VgrG |
| T6CP000467 | TssH | PLU_RS20875 (tssH) | 4940978..4943659 | - | 2682 | WP_011148324.1 | type VI secretion system ATPase TssH |
| T6CP011446 | TagL | PLU_RS20880 | 4943908..4945584 | - | 1677 | WP_011148325.1 | OmpA family protein |
| T6CP000468 | TssL | PLU_RS20885 | 4945601..4946245 | - | 645 | WP_011148326.1 | type VI secretion system protein TssL, short form |
| T6CP000469 | TssK | PLU_RS20890 (tssK) | 4946288..4947646 | - | 1359 | WP_041380387.1 | type VI secretion system baseplate subunit TssK |
| T6CP000470 | TssC | PLU_RS20895 (tssC) | 4947666..4949198 | - | 1533 | WP_011148328.1 | type VI secretion system contractile sheath large subunit |
| PLU_RS20900 | 4950105..4950545 | - | 441 | WP_011148329.1 | hypothetical protein | ||
| PLU_RS20905 | 4950825..4952036 | - | 1212 | WP_011148330.1 | MFS transporter | ||
| PLU_RS20910 | 4952453..4953391 | + | 939 | WP_011148331.1 | fucose-binding lectin II | ||
| PLU_RS20915 | 4953811..4954812 | + | 1002 | WP_011148332.1 | hypothetical protein | ||
| PLU_RS20920 | 4955352..4956800 | + | 1449 | WP_011148333.1 | NAD(P)/FAD-dependent oxidoreductase | ||
| PLU_RS20925 | 4956862..4957422 | - | 561 | WP_011148334.1 | rhomboid family intramembrane serine protease | ||
| PLU_RS25715 | 4957634..4957904 | - | 271 | pseudogene | transposase | ||
| PLU_RS24720 | 4958100..4958303 | - | 204 | WP_049789802.1 | hypothetical protein | ||
| PLU_RS24725 | 4958454..4958657 | - | 204 | WP_049789802.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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