SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000468
Component protein type	TssL
T6SS ID (Type)	T6SS00053 (Type Unknown)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (215 a.a.); Nucleotide sequence (645 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS20885
Coordinate (Strand)	4945601..4946245 (-)
NCBI ID	WP_011148326.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
DotU	PF09850.11	1e-39	7..205

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-184	MNKEISIDDLMLDIGMLVIALKSGDKSMYGEALYQKGVELIDAARQQLSASGISEENMAHIIYALCALLDETVLRRPERDHGYETWSKTPLQTRFCNSNHAGERLFERIRHVLDQPQPSLLVLAGFQRVLALGFQGGDLEKISQERQSLLDVLTDRAGVMAVQPHQMIRVNADRHQGQYWRARS
Transmembrane helix	185-207	PWFWGCLAVAGITLVWCGLRLYL
Inside	208-214	QQYLSVR

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9919	-	-

Protein sequence: 215 a.a.

						>T6CP000468 NC_005126:c4946245-4945601 [Photorhabdus laumondii subsp. laumondii TTO1] [TssL]
MNKEISIDDLMLDIGMLVIALKSGDKSMYGEALYQKGVELIDAARQQLSASGISEENMAHIIYALCALLDETVLRRPERD
HGYETWSKTPLQTRFCNSNHAGERLFERIRHVLDQPQPSLLVLAGFQRVLALGFQGGDLEKISQERQSLLDVLTDRAGVM
AVQPHQMIRVNADRHQGQYWRARSPWFWGCLAVAGITLVWCGLRLYLQQYLSVR*					

Nucleotide sequence: 645 bp

						>T6CP000468 NC_005126:c4946245-4945601 [Photorhabdus laumondii subsp. laumondii TTO1] [TssL]
ATGAACAAAGAGATTTCAATTGATGACCTGATGCTCGACATTGGGATGCTAGTGATTGCGCTAAAAAGCGGTGATAAATC
GATGTACGGTGAGGCGTTATATCAAAAAGGGGTTGAATTGATAGATGCGGCACGGCAGCAATTAAGTGCAAGTGGCATCA
GCGAAGAGAACATGGCTCACATCATCTATGCCTTGTGTGCATTGCTGGATGAAACCGTACTCAGACGCCCTGAGCGGGAT
CATGGCTATGAAACTTGGTCGAAAACGCCGTTGCAGACACGATTTTGCAATAGCAACCATGCAGGAGAACGGCTGTTTGA
ACGTATACGTCACGTGCTGGATCAACCACAACCCTCTCTGCTGGTATTAGCGGGTTTCCAGCGCGTATTGGCATTGGGCT
TTCAGGGCGGTGACTTGGAAAAGATTTCTCAGGAACGCCAGTCATTACTGGATGTCCTGACTGATCGTGCCGGGGTAATG
GCGGTGCAGCCCCATCAGATGATACGCGTCAATGCAGACCGTCATCAGGGCCAATATTGGCGTGCACGCTCTCCGTGGTT
TTGGGGATGCTTGGCGGTAGCCGGAATAACTTTGGTGTGGTGCGGTCTGCGTCTCTACCTTCAGCAATATTTGTCTGTTA
GGTAA					