Detailed information of component protein


Summary

Component ID T6CP000469
Component protein type TssK
T6SS ID (Type) T6SS00053 insolico (Type Unknown)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (453 a.a.); Nucleotide sequence (1359 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS20890
Coordinate (Strand) 4946288..4947646 (-)
NCBI ID WP_041380387.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.3e-140 18..449
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-452 MKILRPLWIEDAFLAPQQFQQQARWEALTNNCIAHLGLIHPWGVLDIRFDQEALRLNRLKVQHLKARLPDGTLIDTDHADNLPAVCDLQQVASADMRAVEVLLALPLEHANGGNCRQSSESVGPGQPPLRYQQEWVEIQDRYGNGRESIAVERHAISLRFQHDQNEAYLTCPLARLVRDGQSGWMLDDRFVPPLLSFAAHPPLLEQLDLLLTQLRAKRTRLMGMRRESHQRMADFAVADVSLFWLLNALNSYEPVLNNFNAAPALHPEIIYRELVKLAGALLTFSLESDLDAIPDYQHDQLSDVFPPLIRLISTLLEASLPSRVISIELEVVRENQWRASLHDRRLCEEADFYLSVRSSMPAHLLQTQFPQLCKVGAPDDVERLINLSLSGIPLHPLSHVPAAIPLRLENQYFAFDLNNPVAKAMLEAGSCAFYVPGTLSGVQLELFAVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 453 a.a.    

>T6CP000469 NC_005126:c4947646-4946288 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
MKILRPLWIEDAFLAPQQFQQQARWEALTNNCIAHLGLIHPWGVLDIRFDQEALRLNRLKVQHLKARLPDGTLIDTDHAD
NLPAVCDLQQVASADMRAVEVLLALPLEHANGGNCRQSSESVGPGQPPLRYQQEWVEIQDRYGNGRESIAVERHAISLRF
QHDQNEAYLTCPLARLVRDGQSGWMLDDRFVPPLLSFAAHPPLLEQLDLLLTQLRAKRTRLMGMRRESHQRMADFAVADV
SLFWLLNALNSYEPVLNNFNAAPALHPEIIYRELVKLAGALLTFSLESDLDAIPDYQHDQLSDVFPPLIRLISTLLEASL
PSRVISIELEVVRENQWRASLHDRRLCEEADFYLSVRSSMPAHLLQTQFPQLCKVGAPDDVERLINLSLSGIPLHPLSHV
PAAIPLRLENQYFAFDLNNPVAKAMLEAGSCAFYVPGTLSGVQLELFAVLRS*

  Nucleotide sequence: 1359 bp    

>T6CP000469 NC_005126:c4947646-4946288 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
ATGAAAATTCTACGTCCTCTCTGGATTGAAGACGCCTTTTTAGCCCCTCAACAATTTCAGCAACAAGCGCGTTGGGAGGC
ATTGACCAACAACTGTATTGCGCATCTGGGGCTGATTCACCCCTGGGGAGTGCTTGATATTCGGTTTGATCAGGAGGCAC
TGCGCTTAAACCGCCTGAAAGTTCAGCACCTCAAAGCCCGTTTACCGGATGGGACGCTGATTGATACTGATCATGCTGAC
AATCTGCCTGCGGTCTGCGATTTACAGCAGGTGGCGTCGGCGGATATGCGTGCTGTTGAGGTATTACTGGCGCTACCGCT
GGAGCACGCCAATGGTGGCAATTGCCGTCAGAGTAGTGAAAGTGTGGGGCCGGGACAACCGCCGCTACGTTATCAGCAGG
AATGGGTCGAAATTCAGGATAGATATGGCAATGGACGTGAATCCATTGCGGTTGAACGCCATGCCATTTCCCTACGCTTT
CAACATGATCAGAATGAGGCTTATCTGACATGTCCATTGGCGCGTCTGGTGCGTGACGGACAAAGCGGTTGGATGCTGGA
TGACCGTTTTGTTCCGCCATTGCTCTCTTTTGCTGCCCATCCGCCACTGCTAGAGCAGCTTGATCTGTTGCTGACTCAGC
TACGTGCTAAGCGTACCCGCCTGATGGGAATGCGCCGTGAAAGTCATCAACGCATGGCAGACTTTGCTGTTGCGGATGTA
TCGCTGTTCTGGTTGTTGAATGCGCTTAACAGTTATGAACCGGTGTTGAATAATTTTAACGCTGCCCCTGCACTGCACCC
GGAAATTATCTACCGTGAACTGGTGAAGTTAGCGGGGGCGTTACTAACGTTCTCTCTGGAGAGCGATCTCGATGCGATCC
CTGATTATCAACACGACCAGTTAAGTGACGTTTTCCCGCCACTGATCCGGCTTATTAGTACATTACTTGAGGCGAGTCTG
CCATCAAGAGTCATTTCGATTGAACTGGAAGTGGTGCGTGAAAATCAGTGGAGAGCATCACTTCATGATAGACGATTGTG
CGAAGAGGCCGATTTCTATCTCTCAGTGCGATCGTCGATGCCAGCGCACCTGCTACAAACCCAGTTTCCGCAACTGTGCA
AAGTCGGGGCACCTGATGATGTTGAGCGGCTGATTAACTTGTCACTGAGCGGCATTCCTTTACATCCGCTTAGCCATGTA
CCGGCGGCGATCCCGTTGCGGTTGGAAAACCAATATTTTGCTTTTGATCTAAATAATCCAGTCGCTAAAGCCATGTTGGA
GGCGGGAAGTTGCGCCTTCTATGTGCCCGGTACCTTGTCGGGCGTTCAGTTAGAACTGTTTGCGGTGTTACGTTCGTAA