Detailed information of component protein


Summary

Component ID T6CP000465
Component protein type TssM
T6SS ID (Type) T6SS00053 insolico (Type Unknown)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (1120 a.a.); Nucleotide sequence (3360 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS20830
Coordinate (Strand) 4927191..4930550 (-)
NCBI ID WP_011148315.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 6.5e-68 399..709
IcmF_C PF06744.14 3.2e-21 968..1072
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-9 MFKAFITRN
Transmembrane helix 10-30 LGVGLVTSLIALVLGGLLSFW
Inside 31-42 GDRFGLSTQAIK
Transmembrane helix 43-60 IIVWIISMVGVIWLLNLF
Outside 61-1119 RDYKQRLPVQEVAVKPPVEQAVLSEAPFYFQRLQYQLRRRYGPLWRRRVCILLVMGQREQVEAIAPGLTAQHWQEGEHHLLLWGGGLQVQPDKAQLQALRQLRRRRPLDGVVWVMTEEQLGQRTQIETALRMLEKQGQQLGWQAPVYVWNVRHSNWDQRDRPTQTVGCFLSEECTPESLAQSLHSLIPTLANRGMEQAIAENRHDFLLRLAQSLRDKGVTRLVGQLTPLLERPPIRLSGVTFSLPLPVPSGMVEHGWLVDASWNGVLEQVRDSRGQAVGFPWEKSAQWGVIALAALWGIGSVTSFGVNRHQIAVSRERLSAAGDRQGDVSARLLSQHGLQREIDRLQSQSARGTPWYSRFGFNQNEALLKAMWPVYQRNNAELIRDAAARLLHQRLTELVNLPAGSAQRHQRITPAYNQLKVYLMMARPEKADAAVMSRVLMADWPHRAGVTDGLWQNSGEALLTFYAENLPRHPEWKISVDNELVSEVRQILLNQLGQRHGETMLYQKMLQQVAHSYRDLTLAQMTGATEASRLFSSRQVVPGMFTRQAWEGQVQKAIAQVVASRQEEIDWVLSDGRQPISKAASPAELKARLTARYFTDFAGAWLNFLNSLRWHKTHNLSDTIDQLTLMADVRQSPLIALMDTLAYQGEAGQPGTALADSLVKSAQNLFQNNKPSVIDPTRLPPGPLDNAFGPLLALMGKSTEENGLTADPSLSLQTFLTRVTRVRLALQQLANTDDPPAVMEALAQSVFQGKSVELTDTRTYGSLIAASLGAEWNGFGQAVFVQPLTEAWQTVLQPAAASLNAQWQSAVVADWQTDFDGRYPFVAAQNEVSLPMLGQFIRADSGRIEQFLHNQLGGVLHKEGKYWVVDKVNSQGLHVNPAFLTAINQLSQVADVLFANGSEGIRFELRAKPVGDVAETDLTIDSQQLRYFNQMERWQRLRWPGDGDNPGVALTWTGVNSGARLYGDYPGAWGFIRWLEAAQVQMVDESRYRLNFATPEGLALTWILRTEVGKGPLVLLKLRGFTLPKTIFEENTGNNLVESGINNNDDEEEYRQNR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9960 - -


  Protein sequence: 1120 a.a.    

>T6CP000465 NC_005126:c4930550-4927191 [Photorhabdus laumondii subsp. laumondii TTO1] [TssM]
MFKAFITRNLGVGLVTSLIALVLGGLLSFWGDRFGLSTQAIKIIVWIISMVGVIWLLNLFRDYKQRLPVQEVAVKPPVEQ
AVLSEAPFYFQRLQYQLRRRYGPLWRRRVCILLVMGQREQVEAIAPGLTAQHWQEGEHHLLLWGGGLQVQPDKAQLQALR
QLRRRRPLDGVVWVMTEEQLGQRTQIETALRMLEKQGQQLGWQAPVYVWNVRHSNWDQRDRPTQTVGCFLSEECTPESLA
QSLHSLIPTLANRGMEQAIAENRHDFLLRLAQSLRDKGVTRLVGQLTPLLERPPIRLSGVTFSLPLPVPSGMVEHGWLVD
ASWNGVLEQVRDSRGQAVGFPWEKSAQWGVIALAALWGIGSVTSFGVNRHQIAVSRERLSAAGDRQGDVSARLLSQHGLQ
REIDRLQSQSARGTPWYSRFGFNQNEALLKAMWPVYQRNNAELIRDAAARLLHQRLTELVNLPAGSAQRHQRITPAYNQL
KVYLMMARPEKADAAVMSRVLMADWPHRAGVTDGLWQNSGEALLTFYAENLPRHPEWKISVDNELVSEVRQILLNQLGQR
HGETMLYQKMLQQVAHSYRDLTLAQMTGATEASRLFSSRQVVPGMFTRQAWEGQVQKAIAQVVASRQEEIDWVLSDGRQP
ISKAASPAELKARLTARYFTDFAGAWLNFLNSLRWHKTHNLSDTIDQLTLMADVRQSPLIALMDTLAYQGEAGQPGTALA
DSLVKSAQNLFQNNKPSVIDPTRLPPGPLDNAFGPLLALMGKSTEENGLTADPSLSLQTFLTRVTRVRLALQQLANTDDP
PAVMEALAQSVFQGKSVELTDTRTYGSLIAASLGAEWNGFGQAVFVQPLTEAWQTVLQPAAASLNAQWQSAVVADWQTDF
DGRYPFVAAQNEVSLPMLGQFIRADSGRIEQFLHNQLGGVLHKEGKYWVVDKVNSQGLHVNPAFLTAINQLSQVADVLFA
NGSEGIRFELRAKPVGDVAETDLTIDSQQLRYFNQMERWQRLRWPGDGDNPGVALTWTGVNSGARLYGDYPGAWGFIRWL
EAAQVQMVDESRYRLNFATPEGLALTWILRTEVGKGPLVLLKLRGFTLPKTIFEENTGNNLVESGINNNDDEEEYRQNR*

  Nucleotide sequence: 3360 bp    

>T6CP000465 NC_005126:c4930550-4927191 [Photorhabdus laumondii subsp. laumondii TTO1] [TssM]
ATGTTTAAAGCTTTTATTACCCGCAATCTTGGGGTGGGTCTGGTCACCAGTTTGATCGCACTGGTGTTGGGCGGATTGTT
ATCTTTCTGGGGCGATCGATTCGGGTTATCTACTCAGGCTATTAAAATAATTGTCTGGATTATCAGCATGGTGGGGGTGA
TATGGCTGTTGAATCTTTTTCGTGATTACAAACAGCGTCTGCCTGTACAGGAAGTAGCGGTTAAACCGCCTGTAGAGCAA
GCTGTACTTTCAGAAGCGCCATTTTATTTTCAACGGTTGCAATATCAGCTTCGTCGGCGTTATGGCCCCCTTTGGCGTCG
GCGGGTATGTATTTTGTTGGTGATGGGACAACGGGAACAAGTAGAAGCCATTGCCCCCGGGTTAACCGCCCAGCACTGGC
AAGAAGGCGAGCACCACCTGTTGCTGTGGGGCGGCGGTTTGCAGGTACAGCCGGATAAAGCGCAGTTACAGGCGTTGCGC
CAATTGCGTCGCCGTCGTCCGCTGGATGGCGTGGTGTGGGTGATGACCGAAGAGCAACTCGGCCAGCGAACGCAGATAGA
GACCGCGTTGCGCATGCTGGAGAAACAGGGACAACAGCTTGGCTGGCAGGCCCCGGTGTATGTGTGGAATGTGCGTCACA
GCAACTGGGACCAGCGCGACCGGCCAACCCAGACCGTGGGCTGTTTTCTGTCAGAAGAGTGTACGCCTGAGAGTCTGGCG
CAGAGCCTGCACAGCCTGATACCCACGCTGGCGAACCGGGGCATGGAACAGGCGATAGCGGAAAACCGTCACGATTTTCT
GTTGCGACTGGCGCAGTCTTTGCGGGATAAGGGGGTAACACGTCTGGTCGGGCAGTTGACGCCGTTGTTAGAGCGGCCGC
CGATAAGGCTGTCGGGCGTGACGTTCAGTTTACCGCTGCCGGTGCCGTCAGGCATGGTGGAGCATGGCTGGCTGGTGGAT
GCCAGCTGGAATGGGGTGCTGGAACAGGTGCGTGATAGCCGGGGACAGGCGGTGGGTTTTCCGTGGGAGAAAAGTGCGCA
GTGGGGTGTGATAGCGCTGGCAGCGTTGTGGGGAATTGGCAGTGTGACCTCGTTTGGGGTTAACCGTCATCAGATAGCGG
TCAGCCGTGAACGCCTCAGCGCGGCCGGTGACCGTCAGGGAGATGTATCGGCCCGTTTGCTGAGTCAGCATGGGCTGCAA
CGGGAGATTGACCGGTTGCAGTCTCAGTCAGCGCGTGGCACGCCCTGGTACAGCCGTTTTGGGTTCAATCAGAATGAAGC
CTTGTTGAAAGCGATGTGGCCGGTGTATCAGCGCAACAATGCCGAACTGATACGTGATGCCGCTGCCCGGTTGCTCCATC
AGCGCCTGACCGAACTGGTGAACCTGCCGGCGGGCAGTGCACAGCGTCATCAGCGTATCACACCGGCGTATAACCAGTTG
AAAGTGTATCTGATGATGGCGCGGCCGGAGAAAGCGGATGCGGCGGTGATGAGCCGGGTATTGATGGCGGACTGGCCGCA
CCGTGCCGGGGTGACGGACGGTCTGTGGCAAAACAGCGGCGAGGCATTACTGACTTTTTATGCTGAGAATTTACCGCGCC
ACCCGGAGTGGAAAATCAGCGTGGATAACGAACTGGTCAGTGAAGTGCGTCAGATATTGCTCAATCAGCTCGGGCAGCGT
CATGGGGAAACGATGCTGTACCAGAAAATGCTGCAACAGGTGGCCCACAGTTACCGGGATTTAACCCTGGCGCAGATGAC
CGGGGCTACGGAGGCGAGTCGCTTGTTTAGCAGCCGTCAGGTGGTGCCGGGGATGTTTACCCGTCAGGCGTGGGAAGGTC
AGGTGCAAAAAGCGATAGCGCAGGTGGTGGCGTCCCGACAGGAAGAAATTGACTGGGTACTCAGTGACGGTCGTCAGCCA
ATATCGAAGGCGGCTTCACCGGCGGAGCTGAAAGCCCGGCTGACAGCGCGTTATTTTACCGACTTTGCCGGGGCATGGCT
GAACTTCCTTAATAGCCTGCGCTGGCATAAAACCCATAACCTGTCCGACACCATCGACCAGTTAACCCTGATGGCGGATG
TACGCCAGTCCCCGTTGATTGCCCTGATGGATACGCTGGCTTATCAGGGAGAAGCCGGGCAACCGGGCACGGCGTTGGCG
GATTCGCTGGTGAAATCGGCACAAAACCTGTTCCAGAACAATAAACCGTCAGTGATTGACCCGACCCGCCTTCCACCGGG
GCCACTGGATAACGCGTTTGGCCCGTTATTGGCGCTGATGGGCAAAAGCACAGAGGAAAACGGGCTGACGGCGGACCCGT
CACTGAGTCTGCAAACCTTCCTGACGCGGGTGACACGGGTGCGTCTGGCGCTGCAACAACTGGCGAATACCGATGACCCC
CCGGCGGTGATGGAAGCGCTGGCACAGAGTGTATTTCAGGGGAAAAGCGTGGAACTGACGGACACGCGGACCTATGGCAG
CCTGATAGCGGCGAGTCTGGGAGCGGAATGGAACGGGTTTGGTCAGGCGGTGTTTGTGCAACCGTTAACCGAGGCGTGGC
AGACGGTGTTACAGCCGGCGGCGGCCAGTCTGAATGCGCAATGGCAGTCGGCGGTAGTGGCGGACTGGCAGACCGACTTT
GACGGCCGTTATCCATTCGTGGCGGCGCAAAATGAGGTCTCTCTGCCGATGCTGGGGCAGTTTATTCGGGCCGACAGCGG
GCGGATAGAGCAGTTTCTGCACAATCAGTTAGGCGGCGTGCTGCATAAAGAGGGCAAGTATTGGGTGGTGGATAAGGTGA
ACAGTCAGGGACTGCATGTTAACCCGGCCTTTTTAACCGCGATAAATCAACTGAGTCAGGTCGCGGATGTGCTGTTTGCT
AACGGCAGCGAGGGGATACGGTTTGAATTGCGGGCGAAACCGGTGGGTGATGTGGCGGAAACGGACCTGACGATAGATAG
TCAGCAGTTGCGTTACTTTAACCAGATGGAGCGCTGGCAGCGTTTACGCTGGCCGGGGGACGGGGATAATCCCGGGGTGG
CGCTGACCTGGACCGGGGTGAATAGCGGTGCGCGGCTGTATGGCGACTATCCGGGGGCGTGGGGATTCATTCGCTGGCTG
GAGGCGGCACAAGTGCAGATGGTGGATGAAAGCCGTTACCGGCTGAACTTTGCCACGCCGGAGGGGTTAGCGCTGACCTG
GATATTACGGACCGAAGTCGGGAAAGGGCCGCTGGTGTTATTGAAACTGCGGGGTTTTACCCTGCCGAAAACGATTTTTG
AGGAGAATACGGGAAATAACCTTGTTGAATCGGGGATAAATAACAATGACGACGAAGAAGAATATCGCCAGAATAGGTAA