Detailed information of component protein


Summary

Component ID T6CP000470
Component protein type TssC
T6SS ID (Type) T6SS00053 insolico (Type Unknown)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (511 a.a.); Nucleotide sequence (1533 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS20895
Coordinate (Strand) 4947666..4949198 (-)
NCBI ID WP_011148328.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.4e-118 88..385
VipB_2 PF18945.2 5.5e-39 394..505
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-510 MTIQEQATSSVATANHHTGGVYSSLFEKINLRPVERLSDIACFHDSDGLAGVTEDERVTAAVSVLLDLLKASAQKVEQLDKALLDFEIGKLDRKIGRQLDVVIHQPGFQQIESAWRGLKFLVDRTDLGQNVKIEVLDVAKDDLRQDFDDAPEIVQSGFYRHAYIQEYDIPGSEPIGAVIADYEFSAGSQDIALLRNVAKVAAAAHMPFITAVAPTFFGKKSMDEVVVMKDMGHYFERAEYTQWRSFRDSEDARYIGLTLPRVLGRLPYGPKSVPVRTFNYVEEARGPDSSKYLWTNAAFAFAANMVRSFVKNGWCVQIRGPQAGGAITDLPIHLYDLSTGYRAKIPSEVLIPETREFEFANLGFIPLSYYKNRDYACFFSAHSTQKPAVYDTGEATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLEIELNNWLNTLVTEMNDPTDDMQASHPLREAYVVVEDIDDNPGFFRIKLYAVPHFQVEGIDVNLSLVSQMPKAKS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9908 - -


  Protein sequence: 511 a.a.    

>T6CP000470 NC_005126:c4949198-4947666 [Photorhabdus laumondii subsp. laumondii TTO1] [TssC]
MTIQEQATSSVATANHHTGGVYSSLFEKINLRPVERLSDIACFHDSDGLAGVTEDERVTAAVSVLLDLLKASAQKVEQLD
KALLDFEIGKLDRKIGRQLDVVIHQPGFQQIESAWRGLKFLVDRTDLGQNVKIEVLDVAKDDLRQDFDDAPEIVQSGFYR
HAYIQEYDIPGSEPIGAVIADYEFSAGSQDIALLRNVAKVAAAAHMPFITAVAPTFFGKKSMDEVVVMKDMGHYFERAEY
TQWRSFRDSEDARYIGLTLPRVLGRLPYGPKSVPVRTFNYVEEARGPDSSKYLWTNAAFAFAANMVRSFVKNGWCVQIRG
PQAGGAITDLPIHLYDLSTGYRAKIPSEVLIPETREFEFANLGFIPLSYYKNRDYACFFSAHSTQKPAVYDTGEATANSR
INARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLEIELNNWLNTLVTEMNDPTDDMQASHPLREAYVVVEDIDDNPGFF
RIKLYAVPHFQVEGIDVNLSLVSQMPKAKS*

  Nucleotide sequence: 1533 bp    

>T6CP000470 NC_005126:c4949198-4947666 [Photorhabdus laumondii subsp. laumondii TTO1] [TssC]
ATGACTATACAAGAGCAGGCTACATCTTCTGTGGCGACGGCTAACCATCATACCGGTGGGGTTTACTCGTCTTTGTTTGA
GAAAATTAATTTACGTCCGGTAGAACGATTAAGTGATATTGCATGTTTTCATGACAGTGATGGATTGGCTGGGGTGACGG
AAGATGAACGGGTGACCGCGGCGGTTAGCGTTCTTCTCGATCTGCTGAAAGCCTCCGCGCAAAAAGTGGAACAGTTGGAT
AAAGCATTGCTGGATTTTGAGATCGGCAAATTGGATCGCAAAATCGGCCGCCAACTGGATGTGGTGATACATCAGCCGGG
ATTTCAGCAAATAGAATCTGCCTGGCGAGGTTTAAAATTTTTGGTTGATCGGACAGATCTCGGTCAGAACGTCAAAATTG
AAGTGTTGGATGTGGCCAAGGATGATTTGCGGCAAGATTTTGACGATGCACCGGAAATTGTTCAGAGCGGTTTCTATCGT
CACGCTTACATTCAGGAATATGACATACCGGGTAGCGAACCGATTGGCGCAGTGATTGCCGACTATGAATTTAGTGCCGG
ATCGCAGGATATTGCCTTATTGCGCAACGTAGCCAAAGTTGCGGCAGCGGCGCACATGCCATTTATTACTGCTGTCGCTC
CAACTTTTTTTGGCAAAAAGAGCATGGATGAAGTGGTGGTGATGAAAGATATGGGTCACTATTTTGAACGCGCCGAATAC
ACCCAGTGGAGATCTTTCCGCGACAGTGAAGATGCCCGTTATATTGGCCTCACCTTGCCAAGAGTGTTGGGACGTCTGCC
ATATGGCCCGAAGAGTGTGCCGGTGCGAACGTTTAATTATGTCGAAGAAGCAAGAGGGCCGGATAGCAGTAAATATTTGT
GGACCAATGCCGCTTTTGCTTTTGCCGCCAATATGGTCAGGAGTTTTGTCAAAAATGGCTGGTGTGTGCAGATCCGTGGT
CCGCAAGCCGGTGGTGCTATCACTGATTTGCCGATCCACCTCTACGATCTGAGTACCGGTTATCGGGCTAAGATCCCATC
AGAAGTGCTGATCCCGGAAACCCGTGAATTTGAATTTGCCAATTTGGGTTTTATTCCGCTCTCTTACTATAAAAATCGCG
ATTATGCCTGCTTCTTTTCGGCTCACTCCACGCAGAAGCCCGCAGTGTATGACACCGGTGAAGCCACGGCCAACAGTCGC
ATCAATGCGCGTCTGCCCTACATCTTCCTGTTATCGCGCATTGCTCATTACTTAAAGCTGATCCAGCGGGAGAACATTGG
CACCACTAAAGATCGGCGTCTGCTTGAAATTGAACTGAATAACTGGCTCAACACACTGGTAACGGAGATGAATGATCCGA
CTGACGACATGCAGGCATCTCATCCGCTGCGTGAAGCATATGTGGTAGTTGAGGATATTGATGACAATCCGGGATTCTTC
CGAATCAAACTGTATGCGGTGCCGCATTTTCAGGTGGAAGGGATTGACGTCAATTTATCTCTGGTTTCTCAGATGCCGAA
AGCGAAATCGTAA