Detailed information of component protein


Summary

Component ID T6CP000467
Component protein type TssH
T6SS ID (Type) T6SS00053 insolico (Type Unknown)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (894 a.a.); Nucleotide sequence (2682 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS20875
Coordinate (Strand) 4940978..4943659 (-)
NCBI ID WP_011148324.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.5e-37 612..777
AAA_lid_9 PF17871.3 1.4e-28 380..470
ClpB_D2-small PF10431.11 1.4e-12 783..859
AAA PF00004.31 9.4e-10 240..352
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-893 MDTVCTALLCRLNSYCARALEAAAAFCQTRAHAEITVEHWLLKLLEGGEGDITVIARRYAWDMDALWQSLLTTINRLPHSINQRPRLSSDLCSLLQVAWCIASLEEGNESIRSVHLLQVLRGQPAWLRIHHSWPLLNLSVTQLQCLRPLLDQQSDERPEIQIAACLTADGSIAEIAGSDPDKYALNPQPLSSALQNVLDKFTLDITARAAEGGIDPVFGRDREIRQMIDILSRRRKNNPILVGEPGVGKTALVEGLALRIIEGNVPDSLKTVSVRMLDLGLLQAGAGVKGEFEQRLKNVIEAVQQSPAPILLFIDEAHTLIGTGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQTIKVDEPDDETACLMLRGLKARYARYHGVHIQEDAVKAAVTLSRRYLTGRQLPDKAVDLLDTASARVRMSLDTVPEALTQLQSQLTALEIEQQAILEDIALGQCHHSDRLTQIEMQRHELYRQQQQRDKQYQQEKQLTQQLLDARQDISRQGDIARLQQQLATRQQGQPLLSSDVDVRSVATVIADWTGVPLSSLLKDEQTGLLHLEQHLGERVVGQEAALREIAQRLRAAKTGLTPEQGPLGVFLLVGPSGVGKTETALALADNLFGGARSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVVLLDEVEKAHRDVINLFYQVFDRGFMRDGEGREIDFRHTVILMTSNLGSDQLMALLAQQPDAPNAVLHELLHPMLRDHFQPALLARFQTVIYRPLQAGALRRIVEIKLEQVTRRLHSHYGLTCTVESSLCDILVNACLLPDSGARNIDSLLNQQILPVLSQALLERLAHHNKPAGVTLGFDEEEGITLAFTDAEPVASLDSEENP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7037 - -


  Protein sequence: 894 a.a.    

>T6CP000467 NC_005126:c4943659-4940978 [Photorhabdus laumondii subsp. laumondii TTO1] [TssH]
MDTVCTALLCRLNSYCARALEAAAAFCQTRAHAEITVEHWLLKLLEGGEGDITVIARRYAWDMDALWQSLLTTINRLPHS
INQRPRLSSDLCSLLQVAWCIASLEEGNESIRSVHLLQVLRGQPAWLRIHHSWPLLNLSVTQLQCLRPLLDQQSDERPEI
QIAACLTADGSIAEIAGSDPDKYALNPQPLSSALQNVLDKFTLDITARAAEGGIDPVFGRDREIRQMIDILSRRRKNNPI
LVGEPGVGKTALVEGLALRIIEGNVPDSLKTVSVRMLDLGLLQAGAGVKGEFEQRLKNVIEAVQQSPAPILLFIDEAHTL
IGTGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQTIKVDEPDDETACLMLRGLKARYARYHGV
HIQEDAVKAAVTLSRRYLTGRQLPDKAVDLLDTASARVRMSLDTVPEALTQLQSQLTALEIEQQAILEDIALGQCHHSDR
LTQIEMQRHELYRQQQQRDKQYQQEKQLTQQLLDARQDISRQGDIARLQQQLATRQQGQPLLSSDVDVRSVATVIADWTG
VPLSSLLKDEQTGLLHLEQHLGERVVGQEAALREIAQRLRAAKTGLTPEQGPLGVFLLVGPSGVGKTETALALADNLFGG
ARSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVVLLDEVEKAHRDVINLFYQVFDRGFMRDGEGR
EIDFRHTVILMTSNLGSDQLMALLAQQPDAPNAVLHELLHPMLRDHFQPALLARFQTVIYRPLQAGALRRIVEIKLEQVT
RRLHSHYGLTCTVESSLCDILVNACLLPDSGARNIDSLLNQQILPVLSQALLERLAHHNKPAGVTLGFDEEEGITLAFTD
AEPVASLDSEENP*

  Nucleotide sequence: 2682 bp    

>T6CP000467 NC_005126:c4943659-4940978 [Photorhabdus laumondii subsp. laumondii TTO1] [TssH]
ATGGATACCGTATGTACCGCACTATTGTGCCGCTTAAATTCTTATTGCGCACGGGCATTGGAAGCTGCTGCTGCATTTTG
CCAGACACGGGCACATGCTGAAATCACGGTGGAACACTGGTTGCTCAAGCTGCTTGAGGGTGGTGAAGGCGATATTACGG
TGATTGCTCGACGTTATGCGTGGGATATGGATGCGTTATGGCAGTCGTTGCTGACTACAATTAACCGTTTACCACATAGC
ATCAACCAACGCCCGCGGTTATCAAGCGATCTGTGTAGTTTGTTACAGGTTGCTTGGTGTATTGCTTCTCTGGAAGAGGG
TAACGAATCTATCCGTTCGGTGCATCTTTTGCAGGTGTTGCGCGGCCAACCGGCTTGGTTGCGTATTCATCATAGCTGGC
CGTTACTCAACTTGAGTGTGACGCAACTACAATGTTTGCGCCCGTTGCTGGATCAACAATCGGATGAGCGCCCGGAGATA
CAGATAGCGGCGTGTCTGACGGCGGATGGATCAATCGCTGAAATTGCGGGTAGCGACCCAGATAAATATGCGCTTAATCC
CCAACCATTATCATCGGCTTTGCAGAACGTATTGGACAAATTCACGCTGGATATCACAGCCAGAGCCGCTGAGGGTGGCA
TTGATCCGGTATTTGGTCGTGACCGCGAAATCCGCCAGATGATCGACATCCTATCGCGTCGGCGTAAAAACAACCCAATT
CTGGTGGGGGAACCGGGGGTAGGGAAAACCGCGCTGGTGGAAGGATTGGCACTGCGTATTATTGAGGGCAATGTTCCTGA
CAGCCTAAAAACCGTCAGCGTGCGGATGCTGGATCTCGGCTTGTTGCAGGCAGGCGCGGGGGTAAAAGGCGAATTTGAGC
AGCGATTGAAAAACGTCATTGAAGCGGTGCAACAGTCACCTGCCCCCATTCTGCTATTTATTGATGAAGCGCACACACTG
ATTGGCACCGGTAATCAGGCAGGGGGCGCTGATGCGGCTAACTTGCTAAAACCTGCGCTGGCACGGGGAGAATTACGCAC
GATTGCCGCTACTACTTGGTCGGAATACAAACAGTATTTTGAGCGGGATGCGGCACTGGAGCGACGCTTCCAGACGATCA
AAGTCGATGAACCGGATGATGAGACAGCTTGCCTGATGCTGCGTGGACTGAAAGCGCGTTACGCCCGTTATCACGGTGTA
CATATTCAGGAAGATGCGGTGAAAGCCGCTGTCACTTTATCTCGTCGTTACCTGACTGGCCGACAGCTTCCAGATAAAGC
GGTAGACCTGTTGGATACCGCCAGTGCGCGAGTCAGGATGAGCCTGGATACGGTACCGGAGGCGTTGACGCAACTCCAGT
CCCAATTGACCGCACTTGAGATAGAGCAACAGGCGATACTGGAAGATATTGCACTGGGGCAATGCCATCACTCAGACCGT
TTGACACAAATTGAAATGCAACGTCATGAACTGTATCGGCAACAACAACAGCGGGATAAACAGTATCAACAGGAAAAACA
GCTCACGCAACAGTTGCTCGATGCCCGGCAGGATATCAGTCGGCAGGGTGATATAGCCCGGTTGCAACAGCAACTGGCGA
CACGACAGCAAGGGCAGCCGTTACTCTCGTCGGATGTTGATGTGCGTTCTGTAGCAACGGTGATTGCTGATTGGACCGGT
GTTCCACTGAGTAGCTTGTTGAAAGACGAACAGACCGGTTTGCTGCATTTAGAACAGCATTTAGGGGAACGGGTTGTTGG
TCAGGAGGCGGCGCTACGGGAAATCGCCCAACGTTTACGTGCTGCTAAAACAGGATTGACGCCGGAACAGGGGCCATTGG
GCGTATTCCTGTTGGTTGGGCCGAGTGGCGTAGGGAAAACCGAAACCGCGCTGGCATTGGCGGATAACCTGTTTGGTGGA
GCGCGTTCGCTGATCACTATCAACCTATCGGAATATCAGGAACCGCATACGGTATCTCAGCTTAAAGGTTCACCGCCCGG
TTATGTCGGATATGGTCAGGGGGGGATCTTAACGGAAGCGGTACGTAAACGCCCGTATAGTGTGGTGCTGTTGGATGAAG
TGGAAAAAGCCCATCGTGACGTCATTAACCTGTTCTATCAGGTATTTGATCGCGGCTTTATGCGCGACGGCGAAGGGCGC
GAGATCGATTTTCGTCATACCGTAATCTTAATGACCTCTAATCTGGGCAGTGATCAACTGATGGCGTTATTGGCACAACA
ACCTGATGCCCCGAACGCCGTATTGCATGAGCTGTTACATCCGATGCTTCGTGATCACTTCCAGCCAGCTCTGTTGGCTC
GCTTTCAGACCGTGATTTACCGCCCGTTACAGGCTGGTGCACTCAGACGCATTGTTGAAATCAAACTGGAACAAGTGACT
CGGCGTCTTCATAGCCATTATGGCCTGACTTGCACGGTGGAAAGCAGCCTGTGCGACATCTTAGTGAATGCTTGTCTGTT
GCCGGACAGTGGAGCACGCAATATCGACAGCCTGCTTAACCAGCAAATTTTACCGGTGTTATCACAGGCACTGCTGGAAC
GTCTGGCCCATCACAATAAACCTGCTGGCGTGACGTTGGGCTTCGACGAAGAAGAGGGTATCACCCTTGCTTTTACCGAT
GCTGAACCGGTCGCTTCATTGGATAGCGAGGAAAACCCATGA