SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000463
Component protein type	TssG
T6SS ID (Type)	T6SS00053 (Type Unknown)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (359 a.a.); Nucleotide sequence (1077 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS20775
Coordinate (Strand)	4914086..4915162 (-)
NCBI ID	WP_041380379.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	1.1e-77	20..320

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-358	MARKSQSAYSRLMQQLAPNIYDFNFYRFCQLLESMRDGCPPLGSTMSPGDDPIRFRPDPGMGFPAGELKNVEWDEQQPEQPPTVRTTFLGLYGVDSPLPTAYLNDIVQLSEGYEGVADFLDIFNHRMMTQYYRIWRKYSYPATYEPSGQDQTSQCLLGLIGLGIAGSQQHIATPASRFLALLSIMRLPTRIAEGVMALVKLLAPLTQVQVVPHDCRRVRLTQPARLTRHHPVQLSQRPVLGKVGTDVNSQMVLDLYTEDTDEAQGWLPQGELHTDLLVLLRVYLGWRCSVRLQLTLPKWVLPSAQLGKQRVRLGRTGILGLKPGSQTVSGMVKINLGHYQGLLPSYQYREAENGSYQC

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9872	-	-

Protein sequence: 359 a.a.

						>T6CP000463 NC_005126:c4915162-4914086 [Photorhabdus laumondii subsp. laumondii TTO1] [TssG]
MARKSQSAYSRLMQQLAPNIYDFNFYRFCQLLESMRDGCPPLGSTMSPGDDPIRFRPDPGMGFPAGELKNVEWDEQQPEQ
PPTVRTTFLGLYGVDSPLPTAYLNDIVQLSEGYEGVADFLDIFNHRMMTQYYRIWRKYSYPATYEPSGQDQTSQCLLGLI
GLGIAGSQQHIATPASRFLALLSIMRLPTRIAEGVMALVKLLAPLTQVQVVPHDCRRVRLTQPARLTRHHPVQLSQRPVL
GKVGTDVNSQMVLDLYTEDTDEAQGWLPQGELHTDLLVLLRVYLGWRCSVRLQLTLPKWVLPSAQLGKQRVRLGRTGILG
LKPGSQTVSGMVKINLGHYQGLLPSYQYREAENGSYQC*					

Nucleotide sequence: 1077 bp

						>T6CP000463 NC_005126:c4915162-4914086 [Photorhabdus laumondii subsp. laumondii TTO1] [TssG]
ATGGCAAGAAAATCACAATCAGCGTATTCCCGGTTAATGCAGCAACTGGCACCGAATATTTACGATTTTAACTTTTATCG
CTTCTGTCAGTTGCTGGAGAGTATGCGGGATGGGTGCCCGCCGTTGGGCAGTACGATGTCGCCCGGTGATGATCCGATCC
GTTTCCGGCCTGATCCCGGTATGGGTTTTCCTGCCGGTGAACTGAAAAATGTGGAGTGGGATGAGCAACAGCCTGAACAG
CCACCGACAGTACGCACGACGTTTCTCGGCTTGTATGGTGTGGATTCACCGCTGCCGACGGCTTATCTGAATGATATCGT
TCAGCTGAGTGAAGGCTATGAAGGCGTAGCAGACTTTCTGGATATTTTTAACCATCGAATGATGACCCAGTATTACCGTA
TCTGGCGTAAATATTCCTATCCCGCGACTTATGAACCGAGTGGTCAAGATCAAACCTCGCAATGCCTGCTTGGGCTGATT
GGTTTGGGGATCGCCGGTAGCCAGCAACATATTGCTACGCCGGCTTCTCGCTTTCTGGCGCTGCTCAGTATCATGCGGCT
GCCAACCCGGATAGCCGAAGGGGTGATGGCGCTGGTTAAGCTATTGGCCCCTCTCACGCAAGTACAGGTGGTTCCCCATG
ATTGCAGACGAGTACGGTTGACCCAACCGGCTCGCTTAACTCGTCACCATCCGGTTCAGCTTTCTCAACGTCCAGTACTG
GGCAAAGTCGGGACGGATGTTAACAGCCAAATGGTGCTGGATCTCTATACCGAAGATACTGATGAAGCTCAAGGGTGGTT
ACCACAGGGGGAACTGCATACCGACCTGTTGGTGTTGCTACGCGTTTATCTGGGTTGGCGTTGCAGCGTGCGATTACAGC
TCACTTTACCCAAATGGGTATTGCCATCGGCGCAACTAGGGAAACAACGCGTTCGGTTAGGTCGAACAGGCATATTGGGA
TTGAAACCGGGCTCACAAACGGTTTCAGGCATGGTGAAAATTAATCTGGGGCACTATCAAGGGCTCTTACCGAGTTATCA
ATATAGGGAGGCCGAGAATGGCAGCTATCAATGTTAA					