Detailed information of component protein


Summary

Component ID T6CP008435
Component protein type TssA
T6SS ID (Type) T6SS00053 insolico (Type Unknown)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (460 a.a.); Nucleotide sequence (1380 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS20760
Coordinate (Strand) 4911700..4913079 (-)
NCBI ID WP_011148302.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 2.8e-52 310..454
ImpA_N PF06812.14 1.6e-21 12..113
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-233 MTTISSGNTIHTGDDPRALPEFSALKEEIGKLNHPARPDVNWARVEQLCLSLFRLNGVELQSAAWYTLARAQRTGLAGIDEGFALIDGLVSHQWAQFWPQPTHARIEIFAWLVARLQQVLRTCVFSYIDLPLIYRVEKVLEQLCEVLQRLELKHVSKLDSLRVQLHNSARRLECLEQEKGAVPVSLASAQSVGGNAILLPEEPPPPQLIYVVQETISSVQPQVKVAQVLTTSR
Transmembrane helix 234-256 WKVWRGFVAGIVFCALVVTGGWL
Outside 257-459 VDKMRQPSPLAEALLATTYPLPQTLLPAQLAELHQSDNATLLSQLQDKTLDASRAQLTNLTTLPAFWPLSYGSQLLQQLRTLWPASQAVQDMQNQWLHQREAAALPMQSLENYHLAQLRLQHLTERLDALDEKRGRYLTGSELKSMVFGIRQPLANTPPLEELLRQLAEQKKSGTVSLALLMQINTRFNQLLNRYYLLLKVGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9820 - -


  Protein sequence: 460 a.a.    

>T6CP008435 NC_005126:c4913079-4911700 [Photorhabdus laumondii subsp. laumondii TTO1] [TssA]
MTTISSGNTIHTGDDPRALPEFSALKEEIGKLNHPARPDVNWARVEQLCLSLFRLNGVELQSAAWYTLARAQRTGLAGID
EGFALIDGLVSHQWAQFWPQPTHARIEIFAWLVARLQQVLRTCVFSYIDLPLIYRVEKVLEQLCEVLQRLELKHVSKLDS
LRVQLHNSARRLECLEQEKGAVPVSLASAQSVGGNAILLPEEPPPPQLIYVVQETISSVQPQVKVAQVLTTSRWKVWRGF
VAGIVFCALVVTGGWLVDKMRQPSPLAEALLATTYPLPQTLLPAQLAELHQSDNATLLSQLQDKTLDASRAQLTNLTTLP
AFWPLSYGSQLLQQLRTLWPASQAVQDMQNQWLHQREAAALPMQSLENYHLAQLRLQHLTERLDALDEKRGRYLTGSELK
SMVFGIRQPLANTPPLEELLRQLAEQKKSGTVSLALLMQINTRFNQLLNRYYLLLKVGE*

  Nucleotide sequence: 1380 bp    

>T6CP008435 NC_005126:c4913079-4911700 [Photorhabdus laumondii subsp. laumondii TTO1] [TssA]
ATGACTACAATATCATCCGGCAACACGATACATACCGGGGATGATCCACGTGCACTGCCGGAATTCAGTGCACTGAAAGA
AGAAATCGGTAAATTGAACCATCCGGCTCGACCTGATGTTAATTGGGCCAGAGTTGAACAACTTTGTCTGTCGTTGTTTC
GATTAAATGGCGTAGAGCTACAAAGTGCCGCTTGGTACACGTTAGCCCGAGCTCAGCGCACCGGATTAGCCGGTATTGAT
GAAGGATTCGCATTGATTGATGGATTAGTGAGCCATCAATGGGCGCAGTTCTGGCCTCAGCCGACGCATGCACGGATTGA
AATTTTCGCTTGGCTGGTTGCACGCTTACAGCAGGTATTGCGTACTTGCGTCTTCTCTTATATTGACTTGCCGCTCATTT
ACCGGGTGGAAAAGGTGCTTGAGCAACTGTGCGAGGTGCTTCAACGTCTGGAGCTGAAACATGTGAGTAAACTTGACAGC
CTACGTGTACAGCTTCACAACAGCGCCCGGCGATTAGAGTGTCTGGAGCAGGAAAAGGGCGCGGTACCGGTATCTCTCGC
TTCGGCGCAGTCTGTTGGGGGCAATGCTATTTTGCTGCCTGAAGAACCCCCTCCGCCGCAACTGATCTATGTGGTGCAGG
AGACAATCTCGTCGGTGCAACCGCAAGTCAAAGTTGCTCAGGTTTTGACGACTTCGCGCTGGAAAGTTTGGCGAGGTTTT
GTGGCGGGGATTGTATTTTGTGCGTTGGTGGTGACAGGCGGTTGGCTGGTGGACAAGATGCGACAACCGTCTCCATTAGC
TGAGGCTTTGTTGGCAACGACCTATCCATTACCGCAGACACTGCTTCCGGCTCAACTTGCCGAATTACACCAATCGGACA
ATGCGACGCTACTGAGCCAGTTACAGGATAAAACGTTGGATGCGAGTCGTGCGCAACTGACAAATTTAACCACTTTGCCA
GCCTTTTGGCCTTTGAGTTATGGTTCTCAGTTATTACAACAGCTACGTACATTGTGGCCGGCCAGCCAAGCAGTACAGGA
TATGCAAAATCAATGGTTACACCAGCGTGAGGCGGCGGCACTGCCGATGCAGTCATTGGAAAATTACCATCTAGCTCAAT
TACGCCTGCAACATCTGACAGAACGACTTGATGCATTGGATGAAAAACGCGGTCGTTATCTCACCGGTTCTGAATTGAAG
TCTATGGTGTTTGGCATTCGGCAGCCGTTGGCGAATACTCCGCCATTAGAGGAGTTGCTGCGTCAACTGGCGGAACAAAA
AAAGAGTGGTACCGTATCGCTGGCATTACTGATGCAAATTAACACCCGTTTTAATCAATTGCTGAATCGCTATTATTTGT
TGCTGAAAGTAGGAGAGTAG