Detailed information of component protein


Summary

Component ID T6CP000466
Component protein type TssI
T6SS ID (Type) T6SS00053 insolico (Type Unknown)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (793 a.a.); Nucleotide sequence (2379 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS20870
Coordinate (Strand) 4938603..4940981 (-)
NCBI ID WP_011148323.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 6.1e-59 44..350
DUF2345 PF10106.11 3.5e-47 615..762
T6SS_Vgr PF13296.8 4.6e-37 493..597
Phage_base_V PF04717.14 1.1e-10 407..473
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-792 MMDRKMLRARQLKASQAVLPGHARYRLEVRRCHAELDVFSFTGEERLCAPYCYTIDFTSPTRDIDPAVMLNKSATFILQAPENPEQVRKVHGVITRFNRLTTSADETRYQVCLEPYLALLRHTRRCGIYQHQSVPEIVEKILRERHEFRGQDFLFTLVRDYPKRELVVQWQESDLDFIQRILAAVGIWYCFEMDSRLGIEVVRFGDNQRNYQYDVRLPLRDPAGMNHNDRDSVWDLHVEHQVVTQGVKVRDYNYREAGNDLQYQVARDRDSTVVGEVYRYGDNFLEKGEQIQPVPETAGFYARLHHERNLYQQHRISGKSSSPMLVPGLVLELDGERPAGVGKAGVLIVAMHSSARRDSNYLVSFSGVPYSEVLSYRPALRERPVIAGTVPARVTSNWSNGTYSHIDTTGRYRVKFDFDLDEWPLGGESLWVRLARPYAGKTHGFHWPLIQGTEVAIAFEQGDPDRPYIAYALHDSRHEDHVTLYNYKRNVLRTPANNKLRMDDERGKEHIKLSTEYGGKSQLNLGHLVDGQRPHPNKRGEGFELRTDDWGTIRAGKGLFISADQQIKASGEQLDMQRALAELDAAFQTAAGLRHAAEAAKAELADIETQAAFMNETLKALQQRALLLSAPSGIAQVTPGNLQFSAGENLITTVGCDADMSIMKKFRLAVGNGLSLFTRTLGLKLLAASGKVEIQAQTDAIEVLAQQALTLASQQDRVTVSAKTELRLECGGAYISLKDGHISFAGPKNARFQCDILQKNGPVSQSSDLTLPERCASTAERMMGNQDGVTKK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8506 - -


  Protein sequence: 793 a.a.    

>T6CP000466 NC_005126:c4940981-4938603 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
MMDRKMLRARQLKASQAVLPGHARYRLEVRRCHAELDVFSFTGEERLCAPYCYTIDFTSPTRDIDPAVMLNKSATFILQA
PENPEQVRKVHGVITRFNRLTTSADETRYQVCLEPYLALLRHTRRCGIYQHQSVPEIVEKILRERHEFRGQDFLFTLVRD
YPKRELVVQWQESDLDFIQRILAAVGIWYCFEMDSRLGIEVVRFGDNQRNYQYDVRLPLRDPAGMNHNDRDSVWDLHVEH
QVVTQGVKVRDYNYREAGNDLQYQVARDRDSTVVGEVYRYGDNFLEKGEQIQPVPETAGFYARLHHERNLYQQHRISGKS
SSPMLVPGLVLELDGERPAGVGKAGVLIVAMHSSARRDSNYLVSFSGVPYSEVLSYRPALRERPVIAGTVPARVTSNWSN
GTYSHIDTTGRYRVKFDFDLDEWPLGGESLWVRLARPYAGKTHGFHWPLIQGTEVAIAFEQGDPDRPYIAYALHDSRHED
HVTLYNYKRNVLRTPANNKLRMDDERGKEHIKLSTEYGGKSQLNLGHLVDGQRPHPNKRGEGFELRTDDWGTIRAGKGLF
ISADQQIKASGEQLDMQRALAELDAAFQTAAGLRHAAEAAKAELADIETQAAFMNETLKALQQRALLLSAPSGIAQVTPG
NLQFSAGENLITTVGCDADMSIMKKFRLAVGNGLSLFTRTLGLKLLAASGKVEIQAQTDAIEVLAQQALTLASQQDRVTV
SAKTELRLECGGAYISLKDGHISFAGPKNARFQCDILQKNGPVSQSSDLTLPERCASTAERMMGNQDGVTKK*

  Nucleotide sequence: 2379 bp    

>T6CP000466 NC_005126:c4940981-4938603 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
ATGATGGATAGAAAAATGCTGCGCGCCCGTCAGCTTAAGGCGAGTCAAGCTGTGCTGCCGGGCCATGCCCGCTACCGGCT
TGAAGTCCGGCGCTGCCATGCTGAACTGGACGTATTCAGCTTCACCGGCGAAGAGCGCCTGTGCGCCCCTTATTGCTATA
CCATTGATTTCACCAGCCCGACCCGGGATATCGACCCGGCGGTGATGTTGAACAAATCCGCCACATTTATCTTGCAGGCA
CCGGAAAACCCGGAGCAGGTGCGTAAAGTACACGGCGTCATCACCCGTTTTAACCGGCTTACCACCTCGGCGGATGAAAC
GCGCTATCAGGTCTGTCTGGAGCCCTATCTGGCGTTACTGCGCCACACCCGGCGCTGTGGGATTTACCAGCACCAGTCAG
TGCCGGAGATTGTGGAAAAGATCCTGCGTGAACGACACGAATTTCGCGGGCAGGATTTTCTGTTCACGCTGGTGCGGGAT
TACCCGAAGCGGGAACTGGTGGTGCAGTGGCAGGAGAGCGATCTGGACTTTATCCAGCGCATTCTGGCGGCCGTGGGGAT
CTGGTATTGCTTCGAGATGGACAGTCGTCTGGGGATTGAAGTGGTGCGGTTCGGGGATAACCAGCGCAACTATCAGTACG
ACGTGCGTTTACCGTTACGTGACCCGGCGGGCATGAATCACAACGATCGTGATTCGGTGTGGGATTTGCACGTGGAACAT
CAGGTAGTGACGCAAGGTGTGAAGGTGCGGGACTACAACTACCGGGAAGCAGGCAATGACCTGCAATATCAGGTGGCACG
AGATCGGGATAGCACCGTGGTCGGTGAAGTATACCGCTATGGTGATAACTTTCTTGAAAAGGGAGAACAGATCCAACCGG
TACCGGAAACCGCAGGATTTTATGCCCGTTTACATCACGAGCGCAACCTGTACCAGCAGCACCGGATCAGCGGCAAAAGT
TCCTCCCCGATGCTGGTCCCCGGCTTAGTGCTGGAGCTCGACGGAGAGCGACCGGCAGGGGTAGGAAAAGCGGGGGTGTT
GATTGTCGCCATGCACAGCAGCGCCCGGCGTGACAGCAACTATCTGGTCAGTTTTAGCGGTGTTCCGTACAGCGAAGTGT
TGAGTTACCGACCGGCGCTGCGGGAACGGCCGGTGATTGCCGGCACAGTTCCGGCGCGGGTGACCAGCAACTGGTCGAAC
GGCACCTACAGCCATATCGACACCACGGGTCGTTACCGCGTCAAATTTGATTTTGACCTGGATGAATGGCCGTTGGGGGG
AGAAAGCCTGTGGGTACGTTTAGCCCGCCCGTATGCCGGTAAAACTCACGGTTTTCACTGGCCGCTGATTCAGGGAACCG
AAGTGGCGATCGCGTTTGAGCAGGGGGATCCGGATCGGCCCTACATCGCCTATGCGTTGCATGATTCCCGGCATGAAGAT
CATGTGACTCTCTACAACTACAAACGCAACGTGCTGCGCACACCGGCCAACAACAAACTGCGCATGGATGACGAGCGCGG
CAAAGAGCACATCAAACTGAGCACCGAATATGGCGGGAAAAGCCAGCTCAATCTCGGCCATCTGGTGGATGGACAGCGGC
CCCATCCCAATAAGCGCGGCGAAGGGTTTGAGTTACGTACCGACGACTGGGGGACGATCCGGGCCGGGAAAGGGCTGTTT
ATCAGCGCCGATCAGCAGATTAAAGCCTCGGGCGAGCAATTAGATATGCAGCGGGCGCTGGCTGAACTGGATGCGGCGTT
TCAGACCGCAGCGGGGTTGCGTCATGCCGCTGAGGCGGCGAAAGCGGAACTGGCTGATATTGAAACGCAGGCCGCTTTTA
TGAATGAAACCCTTAAAGCGTTGCAACAGCGAGCACTCTTACTTTCTGCGCCCTCAGGTATTGCTCAGGTGACCCCGGGC
AATTTGCAGTTCTCCGCCGGGGAGAACCTGATAACCACCGTCGGTTGTGATGCGGATATGAGCATCATGAAGAAATTCCG
GCTGGCGGTGGGGAATGGCCTGAGTTTGTTCACCCGAACTTTGGGCCTAAAGCTGCTGGCGGCTTCCGGCAAGGTAGAGA
TTCAGGCACAGACTGACGCGATAGAGGTGCTGGCTCAACAGGCGCTGACACTGGCAAGTCAGCAGGATCGCGTGACCGTC
TCGGCGAAAACGGAACTGCGTCTGGAGTGTGGCGGGGCTTATATCTCGCTGAAAGACGGGCATATTTCCTTTGCCGGCCC
TAAAAATGCCCGCTTCCAGTGTGACATTTTGCAGAAAAACGGCCCGGTGAGTCAGAGTTCAGACCTGACGTTACCTGAGC
GTTGTGCGTCAACGGCAGAGCGGATGATGGGTAATCAAGATGGTGTAACGAAAAAATGA