Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00051  |
| T6SS type | Type i4b |
| Strain | Photorhabdus luminescens subsp. laumondii TTO1 |
| Replicon (RefSeq) | chromosome (NC_005126) |
| Location | 2679150..2707812 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PLU_RS11360 | 2674801..2675373 | + | 573 | WP_011146525.1 | hypothetical protein | ||
| PLU_RS11365 | 2675665..2676039 | + | 375 | WP_041380079.1 | VOC family protein | ||
| PLU_RS11370 | 2676127..2676366 | + | 240 | WP_011146527.1 | type II toxin-antitoxin system CcdA family antitoxin | ||
| PLU_RS11375 | 2676368..2676673 | + | 306 | WP_011146528.1 | CcdB family protein | ||
| PLU_RS25325 | 2676792..2676884 | - | 93 | WP_071824109.1 | type II toxin-antitoxin system YoeB family toxin | ||
| PLU_RS11380 | 2676944..2677198 | - | 255 | WP_011146529.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | ||
| PLU_RS24565 | 2677254..2677712 | - | 459 | WP_011146530.1 | Exc2 family lipoprotein | ||
| PLU_RS11390 | 2677694..2678662 | - | 969 | WP_011145223.1 | IS30-like element ISPlu1 family transposase | ||
| PLU_RS11395 | 2678805..2679005 | - | 201 | WP_011146531.1 | DUF1778 domain-containing protein | ||
| PLU_RS11400 | 2679150..2682713 | - | 3564 | WP_041380849.1 | transporter substrate-binding domain-containing protein | ||
| PLU_RS11405 | 2682765..2683391 | - | 627 | WP_011146533.1 | response regulator transcription factor | ||
| PLU_RS11410 | 2683422..2684681 | - | 1260 | WP_011146534.1 | hypothetical protein | ||
| T6CP000436 | TssH | PLU_RS11415 (tssH) | 2684731..2687313 | - | 2583 | WP_011146535.1 | type VI secretion system ATPase TssH |
| T6CP000437 | TssM | PLU_RS11420 | 2687306..2690815 | - | 3510 | WP_011146536.1 | hypothetical protein |
| T6CP000438 | TssL | PLU_RS11425 | 2690831..2691454 | - | 624 | WP_109791564.1 | DotU family type IV/VI secretion system protein |
| T6CP000439 | TssK | PLU_RS11430 (tssK) | 2691451..2692848 | - | 1398 | WP_011146538.1 | type VI secretion system baseplate subunit TssK |
| T6CP009657 | TssJ | PLU_RS11435 | 2692852..2693529 | - | 678 | WP_011146539.1 | type VI secretion lipoprotein TssJ |
| T6CP000440 | TssA | PLU_RS11440 (tssA) | 2693522..2694646 | - | 1125 | WP_109791565.1 | type VI secretion system protein TssA |
| T6CP011442 | PAAR | PLU_RS11445 | 2694639..2694938 | - | 300 | WP_173362525.1 | PAAR domain-containing protein |
| PLU_RS11450 | 2694938..2695534 | - | 597 | WP_011146542.1 | hypothetical protein | ||
| T6CP000441 | TssI | PLU_RS11455 (tssI) | 2695569..2697575 | - | 2007 | WP_011146543.1 | type VI secretion system tip protein VgrG |
| T6CP000442 | TssG | PLU_RS11460 (tssG) | 2697600..2698610 | - | 1011 | WP_011146544.1 | type VI secretion system baseplate subunit TssG |
| T6CP000443 | TssF | PLU_RS11465 (tssF) | 2698601..2700412 | - | 1812 | WP_011146545.1 | type VI secretion system baseplate subunit TssF |
| T6CP000444 | TssE | PLU_RS11470 (tssE) | 2700417..2700857 | - | 441 | WP_110826451.1 | type VI secretion system baseplate subunit TssE |
| T6CP000445 | TssD | PLU_RS11475 | 2700912..2701406 | - | 495 | WP_011146547.1 | type VI secretion system tube protein Hcp |
| T6CP000446 | TssC | PLU_RS11480 (tssC) | 2701463..2702944 | - | 1482 | WP_011146548.1 | type VI secretion system contractile sheath large subunit |
| T6CP000447 | TssB | PLU_RS11485 (tssB) | 2702952..2703503 | - | 552 | WP_011146549.1 | type VI secretion system contractile sheath small subunit |
| PLU_RS11490 | 2704228..2704482 | + | 255 | WP_011146550.1 | hypothetical protein | ||
| PLU_RS11495 | 2704727..2705602 | - | 876 | WP_011146551.1 | phage tail protein | ||
| PLU_RS11500 | 2706247..2706519 | + | 273 | WP_011146552.1 | CopG family ribbon-helix-helix protein | ||
| PLU_RS11505 | 2706507..2706797 | + | 291 | WP_011146553.1 | type II toxin-antitoxin system RelE/ParE family toxin | ||
| PLU_RS26035 | 2707022..2707198 | + | 177 | pseudogene | IS1595 family transposase | ||
| PLU_RS11515 | 2707235..2707513 | - | 279 | WP_011146554.1 | putative addiction module antidote protein | ||
| PLU_RS11520 | 2707510..2707812 | - | 303 | WP_011146555.1 | type II toxin-antitoxin system RelE/ParE family toxin | ||
| PLU_RS25340 | 2707910..2708050 | + | 141 | WP_082302859.1 | recombinase family protein | ||
| PLU_RS27160 | 2708043..2708231 | - | 189 | pseudogene | helix-turn-helix domain-containing protein | ||
| PLU_RS26690 | 2708221..2708310 | - | 90 | pseudogene | class A beta-lactamase | ||
| PLU_RS11525 | 2709005..2710858 | + | 1854 | WP_011146556.1 | hypothetical protein | ||
| PLU_RS11530 | 2710876..2711901 | - | 1026 | WP_011146066.1 | IS630-like element ISPlu3 family transposase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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