Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00051  |
| T6SS type | Type i4b |
| Strain | Photorhabdus luminescens subsp. laumondii TTO1 |
| Replicon (RefSeq) | chromosome (NC_005126) |
| Location | 2679150..2707812 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PLU_RS11360 | 2674801..2675373 | + | 573 | WP_011146525.1 | hypothetical protein | ||
| PLU_RS11365 | 2675665..2676039 | + | 375 | WP_041380079.1 | VOC family protein | ||
| PLU_RS11370 | 2676127..2676366 | + | 240 | WP_011146527.1 | type II toxin-antitoxin system CcdA family antitoxin | ||
| PLU_RS11375 | 2676368..2676673 | + | 306 | WP_011146528.1 | CcdB family protein | ||
| PLU_RS25325 | 2676792..2676884 | - | 93 | WP_071824109.1 | type II toxin-antitoxin system YoeB family toxin | ||
| PLU_RS11380 | 2676944..2677198 | - | 255 | WP_011146529.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | ||
| PLU_RS24565 | 2677254..2677712 | - | 459 | WP_011146530.1 | Exc2 family lipoprotein | ||
| PLU_RS11390 | 2677694..2678662 | - | 969 | WP_011145223.1 | IS30-like element ISPlu1 family transposase | ||
| PLU_RS11395 | 2678805..2679005 | - | 201 | WP_011146531.1 | DUF1778 domain-containing protein | ||
| PLU_RS11400 | 2679150..2682713 | - | 3564 | WP_041380849.1 | transporter substrate-binding domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||