Detailed information of component protein


Summary

Component ID T6CP000437
Component protein type TssM
T6SS ID (Type) T6SS00051 insolico (Type i4b)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (1170 a.a.); Nucleotide sequence (3510 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS11420
Coordinate (Strand) 2687306..2690815 (-)
NCBI ID WP_011146536.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 3.3e-31 173..362
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-3 MKK
Transmembrane helix 4-26 LFYAIGWLSVMVILLLLSLTIAV
Inside 27-32 AFSWPT
Transmembrane helix 33-55 IGGLLLFICLLLLLLLLRVAMAF
Outside 56-1169 MPEIMNKLRWLNKFWRKGNNRLEYLLYQHWRQGGYLQSWRRFRSLLHRNEPVPPWFLVVGERGNGKQKLLTRCNVVPMTGKNLPALTENTFTCRWWFFRRAMYMVVSGRYTEGQSLYRQAWLRLISWIAQVRKPAGVLVCLSVEQLLNSDNRALYIAARQVRAQLEPLQIRLERRLPIWLILTHSETLPGFDHWCTQLSVEQHAELLGDFIEHHTVGNVTDVLDKSMNTIVNTLKMMRLKLLNQQRQQPNAEILALPETVAQLQPALGCYLNALFDQDHYLEHGLLRGLFFTAEHQTAGVFSQRLLGEYLPDQVQHSQDQRSHNVLLTGWRTLTKRVCVSLLSLMLVYGVGNALMTTWRGVTQLENIHEADPLERSYLRYQKVEYWLQETLPSLFFYPVTHTMEQRMAQQYQQQAPVGAFNPESVAAHLLARFHNAETPQKRLLVLHWARFINIEQAMTHGATLETLQRMPAYSASLLSGENDPLSAEQRVALRLAQYRQGNAQQAFDQWRNVLQTLLEDSNNWQWLLADEQPTGTHSLTLADFWPLASDDVATINTRIRGIYTQAGEQDIQATLGELAQALNRPAFFTPLQRSFYQQYQNQRQSEWLAFAQAMPQGEMLVRGKKNWQALILAAGQYDSPYITFLTQLERDLSSIEQADRQPWLQTQQRLWQLHGYVQKSGMMQRVSLGNFSVRQRIMSWLGISPQISVRLDDTALTRYRAYRQAVQLNSQRELLSDMETEVLVKNALNNEKGELDDSGLRALFNRFTLWHHETESKQSAGVNETLWRLYQGDAHLVLRYAFLSAASRLQTQWESKVIWPMEKLSRQELFDGRELNARLYEYSNAFVRDTAGYALDIRPEGIKRQEIEDVVFPFSDDFIFYINNLIQPNDLLSATSDIRRRLQEKLALLESEQQLTTAQQEPEQEQKPSAEVTIVSQPATANRGAKVLPVGSSVTLSCDDGVQQLKSMNFNDSMTLHWSPGTCGKVQIDIYFPRFTLSKSYIGSDGLLQFMHAFSRGELTLAAQAFPQRRDELSALGINNITVRYQVSESTAVSTLYQQWQQHQQQQTALLEQRNRLDSQLLNLSEPTVAKGTLSTLPSQITTHWNELRKPKSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9926 - -


  Protein sequence: 1170 a.a.    

>T6CP000437 NC_005126:c2690815-2687306 [Photorhabdus laumondii subsp. laumondii TTO1] [TssM]
MKKLFYAIGWLSVMVILLLLSLTIAVAFSWPTIGGLLLFICLLLLLLLLRVAMAFMPEIMNKLRWLNKFWRKGNNRLEYL
LYQHWRQGGYLQSWRRFRSLLHRNEPVPPWFLVVGERGNGKQKLLTRCNVVPMTGKNLPALTENTFTCRWWFFRRAMYMV
VSGRYTEGQSLYRQAWLRLISWIAQVRKPAGVLVCLSVEQLLNSDNRALYIAARQVRAQLEPLQIRLERRLPIWLILTHS
ETLPGFDHWCTQLSVEQHAELLGDFIEHHTVGNVTDVLDKSMNTIVNTLKMMRLKLLNQQRQQPNAEILALPETVAQLQP
ALGCYLNALFDQDHYLEHGLLRGLFFTAEHQTAGVFSQRLLGEYLPDQVQHSQDQRSHNVLLTGWRTLTKRVCVSLLSLM
LVYGVGNALMTTWRGVTQLENIHEADPLERSYLRYQKVEYWLQETLPSLFFYPVTHTMEQRMAQQYQQQAPVGAFNPESV
AAHLLARFHNAETPQKRLLVLHWARFINIEQAMTHGATLETLQRMPAYSASLLSGENDPLSAEQRVALRLAQYRQGNAQQ
AFDQWRNVLQTLLEDSNNWQWLLADEQPTGTHSLTLADFWPLASDDVATINTRIRGIYTQAGEQDIQATLGELAQALNRP
AFFTPLQRSFYQQYQNQRQSEWLAFAQAMPQGEMLVRGKKNWQALILAAGQYDSPYITFLTQLERDLSSIEQADRQPWLQ
TQQRLWQLHGYVQKSGMMQRVSLGNFSVRQRIMSWLGISPQISVRLDDTALTRYRAYRQAVQLNSQRELLSDMETEVLVK
NALNNEKGELDDSGLRALFNRFTLWHHETESKQSAGVNETLWRLYQGDAHLVLRYAFLSAASRLQTQWESKVIWPMEKLS
RQELFDGRELNARLYEYSNAFVRDTAGYALDIRPEGIKRQEIEDVVFPFSDDFIFYINNLIQPNDLLSATSDIRRRLQEK
LALLESEQQLTTAQQEPEQEQKPSAEVTIVSQPATANRGAKVLPVGSSVTLSCDDGVQQLKSMNFNDSMTLHWSPGTCGK
VQIDIYFPRFTLSKSYIGSDGLLQFMHAFSRGELTLAAQAFPQRRDELSALGINNITVRYQVSESTAVSTLYQQWQQHQQ
QQTALLEQRNRLDSQLLNLSEPTVAKGTLSTLPSQITTHWNELRKPKSE*

  Nucleotide sequence: 3510 bp    

>T6CP000437 NC_005126:c2690815-2687306 [Photorhabdus laumondii subsp. laumondii TTO1] [TssM]
ATGAAAAAATTATTTTATGCCATTGGCTGGCTTAGCGTGATGGTTATCCTTTTATTACTCAGTTTAACTATTGCGGTGGC
ATTTTCATGGCCGACAATAGGTGGTTTATTACTATTTATTTGCCTATTACTGTTGTTATTATTGCTGCGTGTGGCAATGG
CATTCATGCCAGAAATAATGAATAAACTGCGCTGGTTAAATAAATTCTGGCGGAAAGGAAATAACCGTCTGGAATATTTA
CTCTATCAGCACTGGAGACAAGGAGGATATTTACAAAGTTGGCGTCGATTCCGTTCACTGTTACACCGTAACGAACCCGT
TCCACCGTGGTTTCTGGTGGTAGGGGAACGGGGCAATGGTAAACAGAAGTTGTTAACACGCTGCAATGTGGTGCCCATGA
CGGGGAAAAATCTGCCAGCGCTGACAGAAAACACCTTTACCTGTCGCTGGTGGTTCTTCCGCCGGGCAATGTACATGGTT
GTTTCCGGCCGTTATACCGAAGGTCAATCCCTGTACCGGCAAGCCTGGTTGCGTCTAATCAGTTGGATCGCACAAGTACG
TAAACCCGCTGGCGTACTCGTTTGCTTATCGGTGGAACAGTTGCTAAACAGCGACAATAGAGCGCTCTATATCGCCGCAC
GTCAGGTACGTGCTCAGTTGGAACCATTACAGATACGTCTGGAACGCCGCTTACCCATCTGGCTGATCCTTACCCACAGC
GAAACATTGCCGGGGTTTGACCATTGGTGCACCCAACTGTCAGTAGAACAACATGCTGAATTGCTAGGCGATTTTATCGA
GCATCATACGGTGGGTAATGTCACCGACGTGCTGGATAAGAGCATGAACACCATTGTTAACACGTTGAAAATGATGCGCC
TTAAGTTGCTCAATCAGCAACGGCAGCAACCCAATGCAGAAATCTTAGCGTTACCAGAAACGGTAGCTCAACTGCAACCT
GCACTGGGTTGTTACTTGAATGCACTGTTCGACCAAGACCATTATCTGGAGCATGGTCTGTTGCGTGGCCTGTTTTTTAC
CGCCGAGCATCAAACTGCTGGCGTTTTCAGCCAACGTTTGTTGGGAGAATACCTGCCAGATCAAGTTCAACATAGCCAAG
ATCAACGTAGCCATAACGTATTGCTGACTGGCTGGCGGACATTGACCAAACGCGTATGCGTTAGCCTACTCAGTTTGATG
CTGGTGTACGGTGTCGGCAATGCATTGATGACGACCTGGCGTGGCGTTACGCAACTTGAAAATATCCATGAGGCAGACCC
GCTTGAGCGGAGTTACTTGCGCTACCAAAAAGTTGAATACTGGTTGCAGGAAACCTTGCCATCTCTGTTTTTCTATCCGG
TCACCCATACGATGGAACAACGGATGGCACAGCAATACCAGCAACAAGCACCTGTTGGTGCATTCAACCCGGAGTCGGTA
GCGGCACACTTACTAGCACGTTTCCATAACGCGGAAACACCGCAAAAACGACTGTTGGTTTTACATTGGGCACGCTTTAT
TAACATAGAACAGGCAATGACACATGGCGCTACGCTAGAAACTTTACAGCGTATGCCTGCTTATTCAGCTTCACTATTAA
GTGGTGAAAACGATCCTTTATCCGCGGAACAACGCGTCGCACTTCGTCTGGCGCAATATCGCCAAGGCAATGCACAGCAA
GCATTTGATCAGTGGCGAAATGTATTGCAAACACTACTAGAAGATAGCAATAACTGGCAGTGGCTATTAGCCGACGAACA
ACCGACTGGCACGCATTCGCTGACACTGGCTGATTTCTGGCCGCTCGCCAGCGATGATGTTGCCACAATTAACACACGTA
TTCGTGGTATCTATACCCAAGCAGGTGAGCAAGATATTCAGGCAACCTTAGGAGAACTGGCACAAGCCCTTAACAGACCG
GCATTCTTTACTCCTTTACAGCGCTCGTTTTATCAACAGTATCAAAATCAGCGCCAATCAGAGTGGTTAGCATTCGCTCA
GGCTATGCCTCAAGGAGAGATGTTAGTTCGAGGCAAGAAAAACTGGCAAGCGCTGATATTAGCAGCGGGCCAATATGACA
GCCCCTATATCACCTTTCTGACCCAGCTAGAACGTGATTTATCCTCGATAGAGCAGGCGGATCGGCAGCCTTGGTTACAG
ACACAGCAGCGTTTATGGCAACTGCATGGTTATGTGCAAAAAAGTGGCATGATGCAACGAGTCTCGCTAGGGAATTTCTC
TGTGCGCCAGCGCATCATGTCATGGCTTGGAATTTCACCGCAGATCTCGGTACGGCTGGATGATACCGCGCTGACACGCT
ATCGCGCCTACCGACAGGCGGTGCAGTTAAATAGCCAACGCGAGTTGCTCAGTGATATGGAAACCGAGGTGTTGGTTAAA
AATGCGCTAAATAACGAGAAAGGAGAGTTGGATGATAGCGGTTTACGCGCATTGTTTAACCGTTTCACCCTGTGGCACCA
TGAGACTGAAAGCAAACAGAGTGCAGGAGTAAATGAAACCTTATGGCGGCTCTATCAGGGTGATGCGCATCTGGTACTGC
GTTACGCCTTCTTAAGTGCTGCCAGCCGCTTGCAAACTCAGTGGGAAAGCAAAGTGATTTGGCCGATGGAAAAATTGAGC
AGACAGGAACTGTTTGATGGCCGGGAATTGAACGCGCGTTTGTATGAATACAGCAATGCATTTGTACGGGATACCGCAGG
GTATGCGCTGGATATCCGTCCTGAAGGGATTAAACGTCAGGAAATAGAGGATGTAGTCTTTCCGTTTAGCGACGATTTCA
TTTTCTATATCAATAACCTCATTCAACCGAATGACCTACTTTCAGCGACATCGGATATTCGCCGTCGTCTGCAAGAGAAA
CTCGCCTTATTGGAAAGCGAACAGCAACTGACGACAGCACAGCAGGAACCGGAGCAAGAACAGAAGCCATCGGCGGAAGT
AACCATTGTCAGTCAGCCGGCGACCGCTAACCGGGGGGCAAAAGTATTGCCAGTAGGCAGTTCAGTGACGTTGAGTTGTG
ATGATGGCGTACAGCAGCTTAAGAGTATGAATTTCAATGACAGCATGACGCTGCACTGGAGCCCAGGAACATGCGGTAAA
GTACAAATTGATATCTATTTTCCTCGCTTTACCCTAAGCAAAAGTTACATTGGCTCCGATGGTTTGCTGCAATTTATGCA
CGCTTTCTCCCGCGGTGAACTGACATTAGCAGCTCAAGCGTTCCCGCAACGGCGGGATGAATTAAGTGCGCTGGGTATCA
ATAACATCACTGTGCGCTATCAAGTCAGCGAAAGCACAGCGGTTTCAACACTCTACCAACAATGGCAGCAACATCAGCAA
CAACAAACGGCGTTATTGGAACAACGCAACCGACTGGATAGCCAGTTGTTAAATTTAAGTGAACCTACAGTGGCAAAGGG
AACTCTCTCTACTTTGCCATCACAGATCACCACCCATTGGAACGAATTAAGGAAACCTAAAAGTGAGTAA