Detailed information of component protein


Summary

Component ID T6CP000439
Component protein type TssK
T6SS ID (Type) T6SS00051 insolico (Type i4b)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (466 a.a.); Nucleotide sequence (1398 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS11430
Coordinate (Strand) 2691451..2692848 (-)
NCBI ID WP_011146538.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.2e-102 19..462
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-465 MFEHKPMYWYSGLYLQPQHFQAHELQHEYWQGRYQLLTQPYAFGVVKLAFNLAALSDEVLSVHHAAFIFPDGGYVDCDVNGVLSARSLRDCWPVRDKPQRIYVGLRMFSHNQNNVTGITDANGVGNITSRWVTWPQEQRMRDAFGEGPEAEVQQLTYNLRFFLHDEIAQATGYTLLPVGQLHCTSDGIALDNRYLPPCLTLYAVPQLGQRIDQLCQELTGRIHQLEELKRPQTLEGEIYTQEKSTLLLTLRTLARYVVQLHHFQEARDVHPLQIFGLLRQLISELSCFTDRCSFLGQWNGQEEVLEKYQHLDLALTLDSCERTIADLLNALVLEPNTVISLQQESRGYYHATFNTTGSNEQQRLYLVLRSDSFTHREREIPDDRLIKLAAAEQIDNIINRALPGVRLYYQEIAPHGLPNRANTCYFRLENRGALWQQVEESKRVAVHWADAPDDLQTEIVIVRAS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -


  Protein sequence: 466 a.a.    

>T6CP000439 NC_005126:c2692848-2691451 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
MFEHKPMYWYSGLYLQPQHFQAHELQHEYWQGRYQLLTQPYAFGVVKLAFNLAALSDEVLSVHHAAFIFPDGGYVDCDVN
GVLSARSLRDCWPVRDKPQRIYVGLRMFSHNQNNVTGITDANGVGNITSRWVTWPQEQRMRDAFGEGPEAEVQQLTYNLR
FFLHDEIAQATGYTLLPVGQLHCTSDGIALDNRYLPPCLTLYAVPQLGQRIDQLCQELTGRIHQLEELKRPQTLEGEIYT
QEKSTLLLTLRTLARYVVQLHHFQEARDVHPLQIFGLLRQLISELSCFTDRCSFLGQWNGQEEVLEKYQHLDLALTLDSC
ERTIADLLNALVLEPNTVISLQQESRGYYHATFNTTGSNEQQRLYLVLRSDSFTHREREIPDDRLIKLAAAEQIDNIINR
ALPGVRLYYQEIAPHGLPNRANTCYFRLENRGALWQQVEESKRVAVHWADAPDDLQTEIVIVRAS*

  Nucleotide sequence: 1398 bp    

>T6CP000439 NC_005126:c2692848-2691451 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
ATGTTTGAACATAAACCGATGTATTGGTATTCAGGATTATATTTACAGCCGCAACACTTTCAGGCCCATGAATTGCAACA
TGAATACTGGCAAGGACGTTATCAGTTACTGACACAACCTTATGCTTTTGGTGTGGTGAAACTCGCATTCAATCTGGCCG
CGCTAAGTGATGAAGTACTGAGTGTCCATCACGCCGCGTTTATTTTTCCCGATGGTGGTTACGTGGATTGTGATGTCAAC
GGCGTACTCAGTGCCCGATCATTGCGGGATTGCTGGCCGGTACGTGACAAACCGCAGCGCATCTATGTTGGCCTGCGCAT
GTTCAGCCACAATCAGAATAACGTCACCGGTATCACGGATGCCAATGGTGTCGGTAATATCACCAGCCGGTGGGTAACAT
GGCCGCAAGAACAGCGTATGCGGGATGCTTTTGGCGAGGGGCCGGAAGCGGAAGTGCAACAATTGACCTATAACTTACGT
TTTTTCTTGCACGATGAGATTGCTCAGGCAACGGGTTATACACTATTACCGGTTGGCCAACTGCACTGCACCAGTGACGG
TATTGCGCTGGATAACCGCTATCTACCGCCATGTTTGACGCTCTATGCTGTGCCACAACTGGGCCAGCGCATTGATCAAC
TGTGTCAGGAGTTAACCGGGCGTATCCATCAATTGGAAGAGTTGAAACGCCCGCAAACACTGGAAGGGGAAATTTATACT
CAGGAAAAAAGCACATTATTGCTGACACTACGGACTCTGGCGCGTTATGTCGTACAGTTGCACCATTTTCAGGAAGCGAG
AGATGTTCACCCCTTACAGATTTTTGGATTATTGCGCCAACTGATCAGCGAGCTTTCCTGTTTTACCGACCGTTGCTCCT
TTTTAGGCCAGTGGAACGGGCAGGAAGAGGTACTGGAGAAATATCAGCATCTGGATCTGGCGCTAACTCTTGATAGTTGT
GAACGGACAATTGCCGATTTGCTTAATGCGCTGGTGCTGGAACCCAATACCGTGATCTCTCTGCAACAGGAAAGCCGTGG
TTATTATCATGCAACCTTCAATACAACGGGGAGCAATGAACAGCAACGGCTCTATTTGGTGCTGCGTTCTGACAGCTTTA
CTCATCGCGAGCGTGAAATTCCTGATGATCGCTTGATTAAACTGGCGGCGGCAGAACAGATCGACAACATTATTAACCGT
GCTTTGCCCGGTGTACGTCTGTACTACCAGGAAATTGCGCCACATGGTTTACCTAACCGAGCAAACACCTGCTATTTCCG
GCTAGAAAATCGCGGTGCATTATGGCAGCAGGTAGAAGAGAGCAAACGTGTGGCAGTGCACTGGGCAGATGCGCCAGACG
ATTTACAAACAGAAATCGTTATAGTGAGAGCGTCATGA