Detailed information of component protein


Summary

Component ID T6CP000443
Component protein type TssF
T6SS ID (Type) T6SS00051 insolico (Type i4b)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (604 a.a.); Nucleotide sequence (1812 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS11465
Coordinate (Strand) 2698601..2700412 (-)
NCBI ID WP_011146545.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.3e-170 6..599
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-603 MMLLPQKILTYYNRELSYLRQYGAAFSQRFPKIAKRLGFAEGVSEDPHVERLVESFAFLTAKIHQRIDEDMPELSNAMLEVLAPQFLRQVPSVSLVQFQQDLLTSGVTGMMTVARHTPLISQPVGDVTCRFRTVYPLEMLPLDLTHAELIPDPYDRDFILTLNFTLWPGASFQAQHIRLYLHGAPMLTHSLYELLSAQVKQLECRLGERTFNLNRRGVQVVGFDPQDNLCADDPLINPVHHLFRDYFSFPEKFLFLDIPLPDAGLITRSLGELQYRFRLKDCVALRRIERMSDKVSNETFRLNCVPIINLFPHHAEPIIPLETEHEYLVQPDARRPQSMEVYTIDQVEIVSRQQEQLSSKPVPSLFGIGHTQSDEQFSLFWQATPRPSLRHNDLGMNMFIGFSDSSGEHLKPETDVVILSLTCTNRDIPRQLSNGHPDGDFESESALPGVKILGLIRPRLPVRPQPNSALNWRLVSQLNLNQMLLSGPQGVQCLKETLELYNLLGDPAISRLIAQLQQIAIAPVSARLNPADPYSLARGLEVTLTFQAQAGEFVDFYLFCSLLERFIAMYTPINSFTQTVTQLETINNSTRRWPRRSGRLTWL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9944 - -


  Protein sequence: 604 a.a.    

>T6CP000443 NC_005126:c2700412-2698601 [Photorhabdus laumondii subsp. laumondii TTO1] [TssF]
MMLLPQKILTYYNRELSYLRQYGAAFSQRFPKIAKRLGFAEGVSEDPHVERLVESFAFLTAKIHQRIDEDMPELSNAMLE
VLAPQFLRQVPSVSLVQFQQDLLTSGVTGMMTVARHTPLISQPVGDVTCRFRTVYPLEMLPLDLTHAELIPDPYDRDFIL
TLNFTLWPGASFQAQHIRLYLHGAPMLTHSLYELLSAQVKQLECRLGERTFNLNRRGVQVVGFDPQDNLCADDPLINPVH
HLFRDYFSFPEKFLFLDIPLPDAGLITRSLGELQYRFRLKDCVALRRIERMSDKVSNETFRLNCVPIINLFPHHAEPIIP
LETEHEYLVQPDARRPQSMEVYTIDQVEIVSRQQEQLSSKPVPSLFGIGHTQSDEQFSLFWQATPRPSLRHNDLGMNMFI
GFSDSSGEHLKPETDVVILSLTCTNRDIPRQLSNGHPDGDFESESALPGVKILGLIRPRLPVRPQPNSALNWRLVSQLNL
NQMLLSGPQGVQCLKETLELYNLLGDPAISRLIAQLQQIAIAPVSARLNPADPYSLARGLEVTLTFQAQAGEFVDFYLFC
SLLERFIAMYTPINSFTQTVTQLETINNSTRRWPRRSGRLTWL*

  Nucleotide sequence: 1812 bp    

>T6CP000443 NC_005126:c2700412-2698601 [Photorhabdus laumondii subsp. laumondii TTO1] [TssF]
ATGATGTTATTACCACAAAAAATACTGACTTATTACAACCGGGAATTGAGTTATTTAAGACAATATGGCGCTGCTTTCTC
GCAGCGTTTTCCTAAAATTGCTAAACGTCTTGGGTTCGCAGAAGGTGTTTCAGAAGATCCGCATGTAGAACGTCTGGTGG
AATCTTTTGCATTTCTGACAGCAAAAATCCACCAGCGGATTGATGAAGATATGCCGGAACTGAGCAACGCCATGTTAGAG
GTATTAGCGCCACAGTTTCTACGTCAGGTACCGTCGGTATCGTTGGTGCAGTTTCAACAGGACCTGTTAACATCCGGTGT
GACCGGAATGATGACGGTAGCGCGGCATACTCCGTTGATTTCTCAACCGGTAGGTGATGTGACATGTCGTTTCCGCACGG
TATATCCGCTGGAGATGTTGCCATTGGATTTAACGCATGCAGAACTAATACCAGACCCTTACGATCGGGATTTCATCTTA
ACGCTGAATTTTACCTTGTGGCCGGGTGCCAGCTTTCAGGCACAACATATCCGGTTGTACTTACATGGCGCGCCAATGCT
GACCCATAGCTTGTATGAATTGTTGTCGGCCCAAGTTAAGCAACTGGAATGTCGGTTAGGCGAGCGTACATTCAACCTGA
ATCGCCGAGGTGTTCAGGTGGTGGGCTTTGATCCGCAAGATAACTTATGTGCCGATGATCCATTGATAAATCCGGTTCAC
CACTTGTTTCGTGATTATTTCAGTTTCCCAGAAAAATTCTTATTCTTGGATATTCCACTACCGGATGCTGGTTTGATTAC
CCGTTCATTAGGTGAGCTGCAATACCGTTTTCGGCTTAAGGATTGTGTCGCATTGCGCCGCATTGAACGTATGAGTGATA
AAGTCAGCAACGAAACCTTCCGGCTAAATTGCGTGCCGATAATTAATCTGTTTCCTCATCATGCGGAACCCATTATTCCA
CTGGAAACAGAGCATGAATATCTGGTTCAACCGGATGCGCGTCGCCCACAAAGTATGGAAGTCTATACCATTGATCAGGT
CGAAATTGTCAGCCGTCAGCAGGAACAATTAAGTTCCAAACCGGTGCCGTCATTATTTGGTATTGGGCATACGCAATCTG
ACGAACAGTTCTCATTGTTTTGGCAGGCAACGCCACGTCCCTCACTCAGACATAACGATCTTGGGATGAATATGTTCATC
GGTTTTTCTGATAGCAGTGGCGAACATCTGAAACCCGAAACCGATGTGGTGATCTTGAGTCTGACCTGTACTAATCGCGA
TATACCGCGGCAATTAAGCAACGGTCATCCTGATGGGGATTTCGAATCAGAAAGCGCGTTGCCAGGGGTAAAAATTCTGG
GATTGATCCGTCCCCGATTGCCGGTACGTCCACAACCCAATAGTGCATTGAACTGGCGGTTGGTATCGCAACTCAATTTG
AACCAAATGCTACTGAGTGGTCCGCAAGGAGTTCAATGTTTAAAAGAGACGCTAGAACTCTACAACCTGCTTGGCGATCC
AGCCATATCGCGGTTGATTGCACAATTACAGCAGATTGCGATTGCGCCAGTAAGTGCACGCTTGAATCCCGCCGATCCCT
ATTCTCTGGCGCGTGGGCTGGAGGTGACATTAACATTTCAGGCACAAGCCGGGGAATTTGTTGATTTTTACCTGTTTTGC
AGCTTGTTAGAACGTTTTATCGCAATGTATACACCGATTAACAGCTTCACGCAGACCGTAACACAGTTAGAGACGATTAA
TAATAGTACCCGCCGTTGGCCACGTCGCAGTGGGAGGCTGACATGGCTATAG