SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000438
Component protein type	TssL
T6SS ID (Type)	T6SS00051 (Type i4b)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (208 a.a.); Nucleotide sequence (624 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS11425
Coordinate (Strand)	2690831..2691454 (-)
NCBI ID	WP_109791564.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
DotU	PF09850.11	2.7e-40	4..199

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Inside	1-183	MMQLLDCYIPVFTCVLRMIQQQVNQAETLRQTVLAELTQAQNRARLQGYGAQDIEEANFAVVVWADEAILCAGQKALSIWRQSSLQAELYDAELGGNTFFDRLAALVPDNYPVRLVYVFCLLAGFYGRYGKHDNLELHNIIQQELNNLPDTLRGYLSLENHRLMNSYDNKPKNKYPNHKWRRK
Transmembrane helix	184-206	LILFMSSITLIYIFITVYLLSIG
Outside	207-207	R

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9554	-	-

Protein sequence: 208 a.a.

						>T6CP000438 NC_005126:c2691454-2690831 [Photorhabdus laumondii subsp. laumondii TTO1] [TssL]
MMQLLDCYIPVFTCVLRMIQQQVNQAETLRQTVLAELTQAQNRARLQGYGAQDIEEANFAVVVWADEAILCAGQKALSIW
RQSSLQAELYDAELGGNTFFDRLAALVPDNYPVRLVYVFCLLAGFYGRYGKHDNLELHNIIQQELNNLPDTLRGYLSLEN
HRLMNSYDNKPKNKYPNHKWRRKLILFMSSITLIYIFITVYLLSIGR*					

Nucleotide sequence: 624 bp

						>T6CP000438 NC_005126:c2691454-2690831 [Photorhabdus laumondii subsp. laumondii TTO1] [TssL]
ATGATGCAGTTGTTGGATTGTTATATTCCCGTATTCACTTGCGTATTGCGCATGATCCAGCAGCAGGTGAATCAAGCGGA
AACACTGCGGCAAACCGTATTAGCTGAGTTGACACAAGCGCAGAATAGGGCGCGTTTGCAGGGTTATGGGGCACAAGATA
TCGAAGAGGCAAATTTCGCCGTAGTAGTTTGGGCAGACGAAGCCATTTTGTGTGCAGGTCAGAAAGCGTTGAGTATTTGG
CGCCAATCATCATTGCAGGCTGAGCTTTATGATGCCGAACTGGGCGGAAATACGTTTTTTGATCGCCTTGCGGCATTAGT
ACCGGATAATTATCCGGTTCGATTGGTCTATGTTTTCTGTCTGCTTGCTGGATTTTATGGCCGTTATGGCAAACATGATA
ATTTGGAATTACACAATATTATCCAGCAAGAGTTAAATAATCTTCCTGATACTTTGCGTGGTTATCTCTCTTTAGAAAAT
CACCGATTAATGAACAGCTACGATAATAAGCCGAAAAATAAATACCCCAATCATAAATGGCGTAGAAAATTAATATTATT
CATGTCATCTATTACATTAATTTATATTTTTATTACCGTCTATTTATTAAGTATTGGTCGGTAA					