SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000440
Component protein type	TssA
T6SS ID (Type)	T6SS00051 (Type i4b)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (375 a.a.); Nucleotide sequence (1125 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS11440
Coordinate (Strand)	2693522..2694646 (-)
NCBI ID	WP_109791565.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
ImpA_N	PF06812.14	3.5e-35	19..144

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-374	MLEMEVTVNLAQTDIARFLQPIAADKPAGCDIEYEPIFEQINAARETDDDFLQDDTWGYETRQADWMKVSALCQEVLEKQSKDLQIACWLTQAQGELYGLAGISGGITLLAHLLETFWPVLYPPLDDTEANSADARLGRLSWLDNQLVKQLDNLTLTDDGKLSLSVWQRVQYFEQRAAVNSELRSALISDGYFGMAECDGSIRTTPAEQFNQLLTRAEQVNKALAELQKIMVELLPDAGNSMSASTQRLQELVALIERFRDMVAPGSSQEYGNSNEAIAAGGDAPNGMNTTFLTEDRAHHEMRAIAIGQMINIANYFRQNEPTSPVPYLIERAARWANMGMAEWLEEMMSENTSALQEIMRVMKGPEINREQNE

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9788	-	-

Protein sequence: 375 a.a.

						>T6CP000440 NC_005126:c2694646-2693522 [Photorhabdus laumondii subsp. laumondii TTO1] [TssA]
MLEMEVTVNLAQTDIARFLQPIAADKPAGCDIEYEPIFEQINAARETDDDFLQDDTWGYETRQADWMKVSALCQEVLEKQ
SKDLQIACWLTQAQGELYGLAGISGGITLLAHLLETFWPVLYPPLDDTEANSADARLGRLSWLDNQLVKQLDNLTLTDDG
KLSLSVWQRVQYFEQRAAVNSELRSALISDGYFGMAECDGSIRTTPAEQFNQLLTRAEQVNKALAELQKIMVELLPDAGN
SMSASTQRLQELVALIERFRDMVAPGSSQEYGNSNEAIAAGGDAPNGMNTTFLTEDRAHHEMRAIAIGQMINIANYFRQN
EPTSPVPYLIERAARWANMGMAEWLEEMMSENTSALQEIMRVMKGPEINREQNE*					

Nucleotide sequence: 1125 bp

						>T6CP000440 NC_005126:c2694646-2693522 [Photorhabdus laumondii subsp. laumondii TTO1] [TssA]
TTGCTTGAAATGGAAGTTACTGTGAACTTAGCCCAAACAGATATCGCGCGTTTTTTACAACCGATTGCTGCTGACAAACC
AGCAGGGTGCGATATCGAATACGAACCTATTTTTGAACAGATAAACGCCGCGCGTGAAACCGACGACGATTTTCTCCAAG
ACGACACATGGGGTTATGAAACCCGTCAGGCTGATTGGATGAAGGTTTCAGCGTTGTGTCAGGAAGTACTGGAAAAACAG
AGTAAAGATTTGCAGATAGCCTGCTGGTTAACCCAAGCGCAAGGGGAACTGTATGGTCTGGCAGGGATTAGTGGCGGTAT
CACATTACTTGCCCATCTACTGGAAACTTTTTGGCCGGTGCTCTACCCGCCGCTGGATGATACAGAGGCAAACAGTGCGG
ATGCCCGTCTTGGTCGGTTAAGCTGGTTGGATAATCAATTGGTGAAACAATTGGACAATCTGACACTGACCGATGATGGC
AAATTGAGCTTAAGCGTCTGGCAACGCGTGCAATATTTTGAACAACGCGCTGCCGTTAATAGCGAATTACGCAGTGCCTT
GATCAGTGATGGTTATTTCGGTATGGCTGAGTGCGACGGCAGTATTCGCACTACACCCGCCGAACAATTTAACCAATTAC
TGACGCGGGCTGAACAAGTTAATAAGGCATTAGCAGAACTGCAAAAAATCATGGTGGAACTATTGCCTGATGCCGGTAAC
AGCATGAGTGCCAGTACGCAGCGATTGCAAGAGCTGGTGGCCTTAATCGAACGATTTCGTGACATGGTGGCACCGGGATC
AAGCCAGGAATACGGCAATAGCAATGAAGCAATAGCGGCAGGGGGAGATGCGCCAAACGGCATGAATACGACTTTTTTAA
CAGAAGATCGGGCGCACCATGAAATGCGCGCTATCGCCATAGGACAAATGATCAATATCGCCAATTACTTTCGTCAAAAT
GAACCTACCAGTCCGGTGCCCTATTTAATTGAACGTGCAGCACGTTGGGCAAATATGGGCATGGCCGAATGGCTGGAAGA
AATGATGTCAGAAAATACCTCCGCGCTACAAGAAATTATGCGCGTGATGAAAGGACCAGAAATAAATAGAGAGCAAAATG
AATAA					