SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000445
Component protein type	TssD
T6SS ID (Type)	T6SS00051 (Type i4b)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (165 a.a.); Nucleotide sequence (495 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS11475
Coordinate (Strand)	2700912..2701406 (-)
NCBI ID	WP_011146547.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	1.2e-31	6..138

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-164	MSSSIFLQIDGIKGESTDSKHKEWIELEHVNFGLFNHARIADSGKRKITVGAADFRTIDCVKVMDSSSIGLLSAVAQGTAIKKVKLEICTIFKGEMHPYAEVEMDECIISDVHETCSRGGEFPQEQISIAYSKIKWTFTPLKEDGTKGTKVGPEGWDLIENKKQ

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9885	-	-

Protein sequence: 165 a.a.

						>T6CP000445 NC_005126:c2701406-2700912 [Photorhabdus laumondii subsp. laumondii TTO1] [TssD]
MSSSIFLQIDGIKGESTDSKHKEWIELEHVNFGLFNHARIADSGKRKITVGAADFRTIDCVKVMDSSSIGLLSAVAQGTA
IKKVKLEICTIFKGEMHPYAEVEMDECIISDVHETCSRGGEFPQEQISIAYSKIKWTFTPLKEDGTKGTKVGPEGWDLIE
NKKQ*					

Nucleotide sequence: 495 bp

						>T6CP000445 NC_005126:c2701406-2700912 [Photorhabdus laumondii subsp. laumondii TTO1] [TssD]
ATGAGTTCTTCAATCTTTTTACAAATTGATGGTATTAAAGGTGAAAGTACCGACAGCAAACATAAAGAGTGGATTGAGCT
GGAACATGTCAATTTTGGTCTATTTAACCATGCACGTATTGCAGACAGCGGTAAACGTAAAATTACCGTTGGTGCAGCAG
ATTTCCGTACCATTGACTGTGTGAAGGTGATGGATTCCAGTTCTATTGGCTTACTGTCTGCTGTGGCGCAAGGTACCGCG
ATTAAGAAAGTGAAACTGGAAATCTGCACGATTTTCAAAGGCGAAATGCATCCTTATGCGGAAGTGGAAATGGACGAATG
TATTATCTCTGACGTTCATGAAACCTGTTCACGTGGCGGTGAATTCCCACAAGAACAGATTTCTATCGCCTATTCCAAAA
TTAAATGGACATTTACACCACTCAAAGAAGACGGAACTAAAGGAACTAAGGTGGGACCGGAAGGTTGGGATCTTATCGAG
AACAAAAAACAATAA					