Detailed information of component protein


Summary

Component ID T6CP000436
Component protein type TssH
T6SS ID (Type) T6SS00051 insolico (Type i4b)
Strain Photorhabdus luminescens subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (861 a.a.); Nucleotide sequence (2583 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS11415
Coordinate (Strand) 2684731..2687313 (-)
NCBI ID WP_011146535.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.6e-40 578..751
AAA_lid_9 PF17871.3 3.3e-27 354..452
ClpB_D2-small PF10431.11 9.3e-11 759..833
AAA PF00004.31 1.4e-10 214..326
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-860 VSNYLKQIVSKLTVEARQCLDEAVNLAVRRTHHEVEIEHLLLALFEKQLPTMEQVCHHGGIDSMTLLNACQRSLALLRSGNHRPPVLATNLTEWMEQTWMYASTHWGASQITAQVLIVALIMNPSLHHSLTSELQQALQGNTDGIEPWLRTQTNTTPQHITAPVGDNTQSALAQYTHHLTQAARDNKLDPVLGREREIRQLIDVLLRRRQNNPLLTGEAGVGKTALIEGLAQRIVDGRVPKVLAQAELFTLDMGLLQAGASVKGEFESRLQKLLDEVKKYPTPVILFIDEAHTLIGAGGQAGQNDAANLLKPALARGELRAIAATTWSEYKKYFEKDAALARRFQLIKVEEPSLELAIAMLRAITPAMEKHHNVKVLAEAVTEAVTLANRYITGRQLPDKSVSLLDSACARVAVSQTDEPAPIEDLRAMLANIAAEQEALLREGGHETQLQKLAQRQAKLQASLAEILPEYHAQRQLVNDILACDEHDERLPVLRAELHQRHHQHAYVFDCVDAACVADIVAGWTGIPLGRMVENERDVLRQLETRLGQRVMGQDHALSQIARQIRIAKVQLADPIKPTGVFMLAGPSGVGKTETALALAHELYGGEHHLITINMSEYQEAHSVSGLKGSPPGYVGYGQGGVLTEAVRRQPYSVVLLDEVEKAHPDVLELFFQVFDKGMMEDAEGQQINFRNTLIILTTNAASDLVMRAAMHGVKEQGENRPATLEDIQEIIRPELQRIFTPAFLGRLQVIPYLPVQGEVLHAIVHHKLNKIVTRYRQSTQCELHYSDTLVDFIAKGCQIAESGAREIDNLLTQFVLPLLSDQLLLGGVPVNQDVWMDVIDGQIQLRSDQKKLSLSNIIN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 861 a.a.    

>T6CP000436 NC_005126:c2687313-2684731 [Photorhabdus laumondii subsp. laumondii TTO1] [TssH]
VSNYLKQIVSKLTVEARQCLDEAVNLAVRRTHHEVEIEHLLLALFEKQLPTMEQVCHHGGIDSMTLLNACQRSLALLRSG
NHRPPVLATNLTEWMEQTWMYASTHWGASQITAQVLIVALIMNPSLHHSLTSELQQALQGNTDGIEPWLRTQTNTTPQHI
TAPVGDNTQSALAQYTHHLTQAARDNKLDPVLGREREIRQLIDVLLRRRQNNPLLTGEAGVGKTALIEGLAQRIVDGRVP
KVLAQAELFTLDMGLLQAGASVKGEFESRLQKLLDEVKKYPTPVILFIDEAHTLIGAGGQAGQNDAANLLKPALARGELR
AIAATTWSEYKKYFEKDAALARRFQLIKVEEPSLELAIAMLRAITPAMEKHHNVKVLAEAVTEAVTLANRYITGRQLPDK
SVSLLDSACARVAVSQTDEPAPIEDLRAMLANIAAEQEALLREGGHETQLQKLAQRQAKLQASLAEILPEYHAQRQLVND
ILACDEHDERLPVLRAELHQRHHQHAYVFDCVDAACVADIVAGWTGIPLGRMVENERDVLRQLETRLGQRVMGQDHALSQ
IARQIRIAKVQLADPIKPTGVFMLAGPSGVGKTETALALAHELYGGEHHLITINMSEYQEAHSVSGLKGSPPGYVGYGQG
GVLTEAVRRQPYSVVLLDEVEKAHPDVLELFFQVFDKGMMEDAEGQQINFRNTLIILTTNAASDLVMRAAMHGVKEQGEN
RPATLEDIQEIIRPELQRIFTPAFLGRLQVIPYLPVQGEVLHAIVHHKLNKIVTRYRQSTQCELHYSDTLVDFIAKGCQI
AESGAREIDNLLTQFVLPLLSDQLLLGGVPVNQDVWMDVIDGQIQLRSDQKKLSLSNIIN*

  Nucleotide sequence: 2583 bp    

>T6CP000436 NC_005126:c2687313-2684731 [Photorhabdus laumondii subsp. laumondii TTO1] [TssH]
GTGAGTAATTATCTTAAACAGATCGTCAGTAAATTAACGGTAGAAGCGCGTCAGTGCCTTGACGAGGCGGTTAATCTGGC
AGTACGGCGCACCCATCATGAAGTGGAAATTGAACATTTGCTGTTGGCTTTGTTTGAAAAACAGCTTCCGACGATGGAGC
AAGTGTGTCACCACGGCGGTATTGATAGCATGACATTGTTGAATGCTTGCCAACGGTCACTGGCATTATTACGCAGCGGT
AATCATCGTCCGCCGGTGCTGGCTACCAACTTAACTGAATGGATGGAACAGACCTGGATGTACGCCAGTACTCACTGGGG
AGCATCACAGATTACCGCTCAAGTACTGATTGTGGCCCTGATCATGAATCCGTCACTGCACCATTCTCTTACCTCAGAGC
TACAACAAGCGTTACAGGGTAACACCGATGGGATAGAACCGTGGTTGCGTACACAGACAAATACGACACCACAACACATT
ACAGCACCTGTTGGGGATAATACCCAATCCGCACTGGCACAATACACGCATCACCTGACACAAGCAGCGCGTGATAACAA
ACTCGATCCGGTTTTAGGACGTGAACGAGAGATTCGTCAGTTGATTGACGTGCTATTACGTCGTCGCCAAAACAACCCGC
TGTTAACCGGTGAAGCCGGTGTCGGCAAAACCGCGCTGATTGAAGGGCTTGCTCAGCGGATCGTGGATGGCCGTGTACCG
AAAGTTTTGGCACAAGCCGAACTATTTACGCTGGATATGGGGCTGTTACAAGCGGGTGCCAGCGTAAAAGGTGAGTTTGA
AAGCCGCTTGCAAAAATTATTGGATGAGGTGAAGAAGTATCCCACCCCGGTGATTCTGTTTATCGATGAAGCGCATACGC
TGATTGGCGCAGGTGGTCAAGCCGGACAAAATGATGCGGCTAATCTGTTGAAACCCGCGCTGGCACGTGGCGAATTACGG
GCAATTGCGGCAACCACCTGGTCTGAATATAAGAAGTATTTTGAAAAAGACGCCGCGTTAGCACGTCGTTTCCAGTTGAT
CAAAGTCGAAGAACCTTCGCTAGAACTGGCAATCGCCATGTTGCGGGCCATAACACCCGCAATGGAAAAGCATCATAACG
TCAAAGTACTTGCAGAGGCAGTCACGGAAGCGGTTACGTTAGCCAACCGTTATATCACTGGACGTCAGTTACCGGATAAA
TCAGTTAGCCTGTTAGATAGCGCCTGTGCCCGCGTTGCCGTTTCACAGACCGATGAACCGGCACCGATTGAAGATCTGCG
AGCCATGTTGGCAAACATTGCTGCCGAACAGGAAGCCCTGTTACGTGAAGGCGGCCATGAAACTCAGTTACAGAAATTGG
CGCAGCGTCAGGCTAAATTGCAGGCATCACTGGCAGAAATTTTGCCGGAATATCACGCTCAACGTCAGTTGGTCAATGAC
ATCCTCGCCTGTGACGAACACGACGAACGGCTACCAGTGTTACGTGCAGAACTGCATCAGCGCCACCATCAGCACGCTTA
TGTCTTTGACTGTGTTGATGCCGCCTGTGTAGCAGACATTGTTGCTGGTTGGACAGGGATACCCCTTGGTCGAATGGTCG
AAAATGAGCGTGATGTGTTGCGTCAGTTGGAAACCCGTCTCGGCCAACGGGTTATGGGGCAAGATCATGCGCTCAGCCAG
ATAGCACGTCAAATTCGGATTGCTAAAGTACAACTTGCCGATCCAATCAAACCTACCGGAGTATTTATGCTCGCAGGGCC
TTCCGGTGTAGGAAAAACCGAGACCGCCTTAGCGCTGGCTCATGAGTTGTATGGTGGTGAACATCATCTGATCACAATTA
ACATGTCGGAATATCAGGAAGCTCATTCGGTTTCCGGCCTGAAAGGTTCTCCTCCAGGCTACGTCGGTTATGGACAAGGT
GGTGTATTGACCGAAGCAGTTCGACGTCAACCTTACAGCGTCGTGCTACTTGATGAAGTGGAGAAAGCTCACCCCGATGT
GCTGGAACTGTTCTTTCAGGTGTTCGATAAAGGCATGATGGAAGATGCCGAAGGGCAACAGATTAACTTTCGCAATACGC
TAATTATCCTGACCACAAATGCGGCATCAGATTTGGTAATGCGGGCCGCCATGCACGGCGTAAAAGAGCAGGGGGAAAAT
CGCCCGGCCACCCTGGAAGATATTCAGGAGATTATCCGACCAGAGCTACAACGTATTTTTACGCCCGCATTTTTAGGTCG
TTTGCAGGTTATTCCTTATCTTCCGGTACAGGGCGAAGTTCTGCATGCCATTGTGCACCATAAACTGAATAAAATTGTCA
CACGTTATCGTCAATCAACCCAATGTGAATTGCACTATAGCGACACGCTGGTGGATTTTATCGCTAAAGGATGCCAGATC
GCGGAAAGCGGTGCTCGTGAAATTGATAATCTGTTAACCCAGTTTGTCCTGCCGTTGTTATCAGATCAATTGCTATTAGG
TGGCGTGCCAGTCAATCAGGATGTCTGGATGGATGTTATAGACGGTCAAATACAGCTACGATCAGACCAAAAGAAACTAT
CACTATCTAATATTATCAACTAA