SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000441
Component protein type	TssI
T6SS ID (Type)	T6SS00051 (Type i4b)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (669 a.a.); Nucleotide sequence (2007 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS11455
Coordinate (Strand)	2695569..2697575 (-)
NCBI ID	WP_011146543.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
Phage_GPD	PF05954.13	2.1e-60	29..323
Phage_base_V	PF04717.14	5e-14	372..441

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-668	MLLGQKNRFLQVIGNLSDIVALNKIEGEEHLSRPYSFSAQLYSNADWDKLESHIGKPLAFRLGEAPNHRIVHGILTELQQQGFSDGQFCYQARIEPWLKMLTLTHNLRVYQRISVPDMVCDIFRKRGFNDVELALKSRYPKLEYCMQYKESDFDFVTRQLEHAGIFYFFRHEERRHVLVLADHPSAFINAPLAVLPYQSKMGDQQGYGLRAWHIHRTMIPGTAEMNGYNVKSAAAISASAKANSGYSTNPKLSIYDDRRQEERNQLETQATLCMEQWESQSYYARAVNSYPSLQVGHQFTLKGHTSADGRYAVGHQRLKAENNLEEGELLFSSQVTLFPANNVFRPRPSVTRPYISGVLSALVVGPTSEEIHTDEQGRIKIQFHWDKEHKKDDDSSCWIRVSQFWNGAKFGAQFVPRVGNEVLVSFIDGDPDSPLVTGTVYNGVKMPPFALPGQKTQSGITTRSSAKGTVEQGHQFCFEDKKGEEFILLHSQKDMRLKVKNDFSAQIDRNVLWEIQEKRDTQIKKGNDTLILSEGNALTEVKKGDKKQTLDRGNFTTTVSAGSYELEVSSGNAKINVGQQCTMTANQGIELKVGASTLSITPAGITIKAPSVTVEGSGKLALKSSGMAELTGTTVKVEGSAMAQLKGGIVQVDATGIAMVKGTLTKIG

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9718	-	-

Protein sequence: 669 a.a.

						>T6CP000441 NC_005126:c2697575-2695569 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
MLLGQKNRFLQVIGNLSDIVALNKIEGEEHLSRPYSFSAQLYSNADWDKLESHIGKPLAFRLGEAPNHRIVHGILTELQQ
QGFSDGQFCYQARIEPWLKMLTLTHNLRVYQRISVPDMVCDIFRKRGFNDVELALKSRYPKLEYCMQYKESDFDFVTRQL
EHAGIFYFFRHEERRHVLVLADHPSAFINAPLAVLPYQSKMGDQQGYGLRAWHIHRTMIPGTAEMNGYNVKSAAAISASA
KANSGYSTNPKLSIYDDRRQEERNQLETQATLCMEQWESQSYYARAVNSYPSLQVGHQFTLKGHTSADGRYAVGHQRLKA
ENNLEEGELLFSSQVTLFPANNVFRPRPSVTRPYISGVLSALVVGPTSEEIHTDEQGRIKIQFHWDKEHKKDDDSSCWIR
VSQFWNGAKFGAQFVPRVGNEVLVSFIDGDPDSPLVTGTVYNGVKMPPFALPGQKTQSGITTRSSAKGTVEQGHQFCFED
KKGEEFILLHSQKDMRLKVKNDFSAQIDRNVLWEIQEKRDTQIKKGNDTLILSEGNALTEVKKGDKKQTLDRGNFTTTVS
AGSYELEVSSGNAKINVGQQCTMTANQGIELKVGASTLSITPAGITIKAPSVTVEGSGKLALKSSGMAELTGTTVKVEGS
AMAQLKGGIVQVDATGIAMVKGTLTKIG*					

Nucleotide sequence: 2007 bp

						>T6CP000441 NC_005126:c2697575-2695569 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
ATGCTATTAGGGCAAAAGAATCGTTTTTTACAGGTTATCGGTAACCTGTCAGATATTGTGGCACTGAACAAAATAGAAGG
TGAAGAGCACCTGTCACGACCTTATTCATTTTCTGCTCAGCTCTATTCCAACGCAGACTGGGATAAGCTGGAGTCTCATA
TCGGTAAACCTTTGGCATTTCGTCTTGGCGAAGCGCCGAATCATCGCATTGTGCATGGCATATTGACTGAATTGCAGCAA
CAAGGTTTTAGCGACGGCCAGTTTTGTTATCAAGCACGTATTGAACCCTGGCTGAAAATGCTGACATTAACCCATAATTT
GCGCGTCTATCAGCGCATCAGCGTGCCGGATATGGTATGTGATATCTTCCGTAAACGTGGGTTTAACGACGTTGAACTGG
CGCTAAAAAGCCGTTATCCGAAGCTTGAATATTGTATGCAATACAAAGAATCAGATTTTGACTTTGTGACACGTCAACTG
GAACACGCGGGGATTTTCTATTTCTTTCGCCATGAAGAAAGGCGTCATGTACTGGTATTGGCAGATCACCCTTCGGCGTT
TATTAACGCACCGTTAGCGGTATTGCCATATCAATCGAAGATGGGTGATCAGCAAGGCTATGGGCTACGCGCCTGGCATA
TTCATCGCACAATGATTCCAGGTACGGCGGAAATGAATGGTTATAACGTTAAAAGTGCTGCGGCAATCAGTGCCAGCGCC
AAAGCGAACAGCGGCTATTCTACCAATCCCAAGCTTTCTATCTATGACGACCGACGTCAGGAGGAACGTAACCAACTGGA
AACACAGGCAACGCTGTGCATGGAACAATGGGAATCACAGTCCTATTACGCACGCGCCGTTAACAGTTATCCCAGTTTAC
AAGTGGGGCATCAGTTTACCCTGAAAGGGCACACCAGCGCCGATGGCCGTTATGCCGTCGGCCACCAGCGATTAAAAGCG
GAGAACAACCTGGAGGAAGGTGAATTACTGTTTTCGTCTCAGGTGACCTTATTCCCGGCGAATAACGTATTCCGTCCGCG
TCCTTCGGTTACGCGGCCCTACATTTCCGGCGTATTGTCCGCGTTGGTGGTAGGGCCGACGTCAGAAGAGATCCATACGG
ATGAACAGGGTCGCATCAAAATCCAGTTTCACTGGGATAAAGAGCATAAAAAAGATGATGACAGCTCCTGCTGGATACGG
GTCAGTCAGTTCTGGAATGGCGCAAAGTTTGGTGCACAATTTGTGCCACGTGTGGGCAATGAAGTCTTGGTGAGTTTTAT
TGATGGCGACCCGGATAGCCCGCTGGTGACCGGAACGGTTTATAACGGGGTGAAGATGCCACCATTCGCGCTACCGGGGC
AGAAGACCCAAAGCGGGATTACGACACGCAGTAGTGCAAAAGGCACGGTGGAGCAAGGACATCAGTTCTGTTTCGAAGAT
AAAAAAGGTGAAGAGTTTATTTTGCTTCACTCACAAAAAGATATGCGCCTGAAAGTGAAAAATGATTTTTCGGCGCAGAT
CGATCGCAACGTGTTATGGGAAATCCAAGAAAAGCGCGATACCCAAATTAAAAAGGGCAATGACACATTAATTTTGAGCG
AGGGCAACGCCTTAACTGAGGTGAAAAAAGGTGACAAAAAACAAACGCTGGATCGTGGCAATTTTACCACCACCGTCAGT
GCAGGCAGTTATGAGCTGGAAGTATCCAGCGGTAACGCCAAAATCAATGTCGGTCAACAATGCACAATGACGGCAAATCA
GGGCATTGAACTGAAAGTCGGTGCCAGCACATTATCGATTACCCCGGCCGGGATCACCATCAAAGCGCCATCGGTTACCG
TAGAAGGATCAGGAAAACTGGCGTTGAAGAGCAGTGGCATGGCGGAGCTAACTGGCACCACGGTAAAAGTAGAAGGCAGT
GCAATGGCACAGCTAAAAGGCGGCATTGTTCAGGTGGATGCGACCGGCATTGCTATGGTGAAAGGCACTTTGACCAAGAT
TGGTTAA					