SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP009657
Component protein type	TssJ
T6SS ID (Type)	T6SS00051 (Type i4b)
Strain	Photorhabdus luminescens subsp. laumondii TTO1
Replicon	chromosome
Sequence	Protein sequence (226 a.a.); Nucleotide sequence (678 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PLU_RS11435
Coordinate (Strand)	2692852..2693529 (-)
NCBI ID	WP_011146539.1
RefSeq	NC_005126
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS-SciN	PF12790.9	6e-10	51..157

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-225	MNNINFYSIIKRRFLILTVILLISGCSHSISNDEKRLQAIEQAKPVYASNAIRLKITAVPQLNVFNNIPNSCTILIVQAEKREQLDKLLANPALLRNLFSGTGATEHILQLDNYVMMPGQSVSLHIDRAEQARYIALIAGYYPAPESTHTRVLSLPLRLEQHGWWNSAWSAEFVPMRINLTLGRYAITRSDFSAGNTGDEVVFPEQIVFPGQTAESGSDESVLRK

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
LIPO(Sec/SPII)	0.9982	pos: 25-26. ISG-CS.	MNNINFYSIIKRRFLILTVILLISG

Protein sequence: 226 a.a.

						>T6CP009657 NC_005126:c2693529-2692852 [Photorhabdus laumondii subsp. laumondii TTO1] [TssJ]
MNNINFYSIIKRRFLILTVILLISGCSHSISNDEKRLQAIEQAKPVYASNAIRLKITAVPQLNVFNNIPNSCTILIVQAE
KREQLDKLLANPALLRNLFSGTGATEHILQLDNYVMMPGQSVSLHIDRAEQARYIALIAGYYPAPESTHTRVLSLPLRLE
QHGWWNSAWSAEFVPMRINLTLGRYAITRSDFSAGNTGDEVVFPEQIVFPGQTAESGSDESVLRK*					

Nucleotide sequence: 678 bp

						>T6CP009657 NC_005126:c2693529-2692852 [Photorhabdus laumondii subsp. laumondii TTO1] [TssJ]
ATGAATAACATAAATTTTTATAGCATCATTAAACGCCGTTTTTTAATATTGACAGTAATTCTTTTAATAAGTGGTTGCAG
TCATTCTATCTCCAACGATGAAAAACGTTTGCAGGCAATCGAACAAGCCAAACCGGTTTATGCCAGCAATGCCATTCGTT
TAAAAATAACCGCGGTTCCGCAACTGAATGTTTTTAATAATATACCAAACAGTTGCACAATATTAATTGTTCAAGCGGAG
AAACGTGAACAATTAGATAAATTACTGGCTAATCCGGCGTTATTACGCAATTTATTTTCCGGCACCGGTGCAACAGAACA
CATATTACAGTTGGATAATTACGTGATGATGCCGGGGCAATCAGTATCTTTACACATCGATAGAGCGGAACAGGCGCGTT
ATATCGCATTAATTGCCGGTTACTACCCGGCACCAGAGAGTACTCATACGCGAGTATTATCACTGCCGCTGCGCCTTGAG
CAACACGGTTGGTGGAATAGCGCCTGGAGTGCTGAATTTGTTCCCATGCGTATTAATCTGACGCTAGGACGTTACGCCAT
TACCCGCAGTGATTTCTCAGCAGGTAACACTGGCGATGAGGTAGTTTTCCCCGAACAAATCGTTTTCCCCGGACAAACGG
CGGAATCCGGCAGTGACGAAAGTGTGTTGAGGAAGTAA					